Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_J06
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 76 6e-15
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 37 0.002
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 36 0.005
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 36 0.007
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 35 0.010
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 33 0.038
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 33 0.051
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 32 0.067
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 32 0.067
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 32 0.089
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 32 0.089
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.16
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 31 0.16
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 30 0.27
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 30 0.36
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.36
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.47
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 0.63
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 1.4
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 27 1.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.9
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 2.5
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 27 2.5
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 2.5
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 2.5
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 27 3.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 4.4
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 7.7
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 7.7
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 75.8 bits (178), Expect = 6e-15
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +2
Query: 161 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKK 334
M E L LR TL GH+GWVT ++T P+ PD++LS SRDK++I+W L RD+ NYG ++
Sbjct: 1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRR 58
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 167 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLK 346
ET LR + GH G+V+ + +P + S RD TL++W L + Y K
Sbjct: 180 ETFSLRTSHYGHTGYVSAVTISPD-GSLCASGGRDGTLMLWDLNESTHLYSLEAKANINA 238
Query: 347 GAFGP 361
F P
Sbjct: 239 LVFSP 243
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
GH V ++ +P ++ S SRDKT+ +W +
Sbjct: 103 GHTSDVLSVSISPDNRQVV-SGSRDKTIKIWNI 134
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 146 KPFSKMSETLKLRGTLRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVWKLT 298
K FS + L TLRGH+G V Q+ +PK+ ++ S+S D +IVW+ T
Sbjct: 34 KVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRET 85
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 292
L GH WV + +P +MILSSS D ++IVW+
Sbjct: 264 LMGHEDWVMSVDWHPT-KEMILSSSADSSMIVWE 296
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +2
Query: 191 LRGHNG---WVTQIATNPKYPD-MILSSSRDKTLIVWKLTRD 304
+ GH+G V ++ATN +Y ILS + DKTL +W+L +
Sbjct: 47 MAGHSGRINCVCELATNSEYRSPFILSGASDKTLRLWQLEEE 88
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 170 TLKLRGTLRGHNGWVTQIATNPKYPD--MILSSSRDKTLIVWKLT 298
+ KL+ LRGH WV ++ + S S+D+ + +W ++
Sbjct: 180 SFKLKAVLRGHLDWVRTLSFKKTSGSTATLASGSQDRYIRLWNIS 224
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLKGA 352
TL GH V+ ++ +P+ P M S S D T VW + R + YT+ +A G+
Sbjct: 350 TLSGHKNLVSGLSASPENPYMFASVSHDNTCRVWDV-RATSGSIYTISRAEKTGS 403
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
TL GH VT+I+ +P ++ S+S D+ +VW L+R
Sbjct: 320 TLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSR 357
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLK 331
++ H+G + +A NP ++ + S DKT+ +W L R+ N +TL+
Sbjct: 276 SVHAHSGPIHSVAFNPHNDFILATCSTDKTIALWDL-RNLNQRLHTLE 322
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 33.1 bits (72), Expect = 0.038
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Frame = +2
Query: 101 HVLPDLTLQWXSLLFKPFSKMSETLKLRGTLRG-------HNGWVTQIATNPKYPDMILS 259
H L L W F S M +T +L +R H+ +VT IA +PK LS
Sbjct: 308 HTADILDLSWSRNNFLLSSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLS 367
Query: 260 SSRDKTLIVWKLTRDENNYGYTLKKAXLKGAFGP 361
S D L +W + ++ L + AF P
Sbjct: 368 GSLDCKLRLWSIKEKAVSFWNELPELITAVAFSP 401
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 32.7 bits (71), Expect = 0.051
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
T RGH V+ +P + ++ILS+S DKT+ VW L R
Sbjct: 251 TCRGHFNNVSCCLFHP-HQELILSASEDKTIRVWDLNR 287
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
L GH+ +V A +P D+I+S+S D+T+ VW ++
Sbjct: 133 LTGHSHYVMCAAFHPS-EDLIVSASLDQTVRVWDIS 167
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 32.3 bits (70), Expect = 0.067
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 316
T GH+ +V +A NPK + SS D T+ VW N+
Sbjct: 136 TFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANF 178
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.3 bits (70), Expect = 0.067
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 185 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
G LRGH W+ +A NP D++LS+ + + +W +
Sbjct: 223 GQLRGHAAWIFAVAFNP-VGDLLLSADVEGKIKIWDI 258
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 31.9 bits (69), Expect = 0.089
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 164 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
S T LR L GH G V + +P + D+ILS S D+T+ + +L
Sbjct: 297 SATGDLRYVLPGHEGSVNHVDFHP-HQDIILSCSSDRTIFLGEL 339
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.9 bits (69), Expect = 0.089
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 167 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
E+ KL TL GH V +A NP P S+ D T+ +W
Sbjct: 458 ESGKLLATLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIW 498
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 292
TLRGH V ++A D+I+S+S D TL VWK
Sbjct: 572 TLRGHTDSVREVAC---LGDLIVSASYDGTLRVWK 603
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
LRGH G V + NP I S+ D + +W L E
Sbjct: 613 LRGHVGRVYSVTINPSRQQCI-SAGTDAKIRIWNLESGE 650
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 185 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
GTL+GH V +A +P + I++ + D+TL WKL
Sbjct: 498 GTLKGHTDRVLYLAMSPN-GENIVTGAADETLRFWKL 533
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYG 319
GH V+ I +P D +S++ DKTL +WK+ + G
Sbjct: 106 GHTDIVSSIEVSP-IEDQFVSTANDKTLKLWKMNQSSRCLG 145
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
L GH V IA +P ++LS S DKT+ VW+L
Sbjct: 480 LEGHKESVYSIAFSPD-SSILLSGSLDKTIKVWEL 513
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 167 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
+T K TLRGH V Q A + +++SSS+D TL VW
Sbjct: 419 KTGKFLATLRGHVAAVYQCAWSTD-SRLLVSSSQDTTLKVW 458
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
T++GH WV+ +A P +I + S D T+ W
Sbjct: 172 TMKGHTNWVSCVAWAPD-ASIIATGSMDNTIRFW 204
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.5 bits (63), Expect = 0.47
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
L+ H+G ++ ++ NP P + + S D+ + +W
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVVKLW 411
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 194 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 304
RGH V NP + ++ S D +++WK+ D
Sbjct: 78 RGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPED 114
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
L+GH+ V + +P +++ SSS D T+ +W
Sbjct: 130 LKGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 167 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLK 346
+TL H +T + P + SSS D TL VW ++ + Y +T++
Sbjct: 91 DTLNAVPARTSHKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYS 150
Query: 347 GAFGP 361
A+ P
Sbjct: 151 HAWSP 155
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 316
+L GH G V + PK ++ S S D T +W + + +++
Sbjct: 184 SLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSF 226
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
++ H+ + +A NP ++ ++S DKT+ +W L
Sbjct: 277 IQAHSKAINAVAINPFNDYLLATASADKTVALWDL 311
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
TL GH V + +P ++ SSS D+ + +W L +
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEK 357
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 310
L GH ++ P+ P +LSS +D +VW + E+
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGES 295
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 158 KMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
K+ + + L GH V IA + + + + SRDK++ +W+ T D+
Sbjct: 363 KIDDDWECTAALEGHENEVKCIAWSCN-GNYLATCSRDKSVWIWEATEDD 411
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Frame = +2
Query: 170 TLKLRGTLRGHNGWVTQI-------ATNPKYPDMILSSSRDKTLIVWKLTRDENNY--GY 322
T + G GH+ +V I A N +I S D TLI+W+LT DE GY
Sbjct: 123 TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT-DEGPILAGY 181
Query: 323 TLKKAXLKGAFGP 361
L + F P
Sbjct: 182 PLSSPGISVQFRP 194
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +2
Query: 197 GHNGWVTQIATNPK----YPDMILSSSRDKTL 280
GH VT +A P YP + SSS+D+TL
Sbjct: 408 GHTASVTAVALGPLDVNGYPTFLASSSQDRTL 439
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
GH+ + + P +LS SRDKT+ VW + +
Sbjct: 187 GHSSVIRGLTFEPT-GSFLLSGSRDKTVQVWNIKK 220
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 101 HVLPDLTLQWXSLLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTL 280
H P L + SL+ + FSK + ++ +GH +T P + L++ D T
Sbjct: 164 HSQPILYDRDGSLIVR-FSKGDQYIRNMYNTKGHIAEITDGCWQPDSSQIFLTTGYDSTA 222
Query: 281 IVWKLTRDEN 310
+W + R ++
Sbjct: 223 RIWDVNRTKS 232
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
L+GH +TQI N D++ S ++DK + VW
Sbjct: 6 LQGHERPLTQIKYNHD-GDLLFSCAKDKVINVW 37
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
LRGH V + + K +I+++S D+TL W +T
Sbjct: 343 LRGHLASVNSVQYSSK-TGLIVTASSDRTLRTWDIT 377
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
GH V + + Y I+SSSRD T VW+L
Sbjct: 301 GHTDNVLGVVVSENY---IISSSRDHTARVWRL 330
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 251 ILSSSRDKTLIVWKLTRD 304
I+S SRD TL VWKL ++
Sbjct: 460 IVSGSRDHTLRVWKLPKN 477
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 316
LRGH+ + + P+ ++ +S S DK++ VW L+ Y
Sbjct: 543 LRGHSLRIYSVLYEPER-NICISGSMDKSIRVWDLSTGTCKY 583
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 292
GH G V ++ +P I S + D L +WK
Sbjct: 371 GHKGTVNEVDFDPFEAQCIASVADDNELHIWK 402
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 164 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENN 313
SE +R HN +T + +PK +++L+ S D + + T++E++
Sbjct: 133 SEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVDGLVSLLDTTKEEDS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,700
Number of Sequences: 5004
Number of extensions: 36457
Number of successful extensions: 148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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