Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_J06
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 44 1e-04
AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical ... 41 7e-04
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 35 0.062
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical p... 33 0.19
AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.19
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 33 0.19
AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic mul... 33 0.19
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 32 0.33
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 32 0.33
AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical... 31 0.58
AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical... 31 0.58
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical pr... 31 0.77
U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily ass... 31 0.77
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 31 0.77
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 31 0.77
U41007-1|AAA82264.1| 326|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical ... 31 1.0
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 1.0
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 30 1.3
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical p... 30 1.3
Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical p... 30 1.3
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 30 1.8
U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 29 2.3
Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical p... 29 3.1
Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical p... 29 3.1
U41007-2|AAA82265.1| 248|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical ... 29 3.1
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 28 5.4
Z81522-7|CAB04232.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 28 7.1
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = +2
Query: 161 MSETLKLRGTLRGHNGWVTQIATNPKY-PDMILSSSRDKTLIVW 289
+ E +KL GTL GH GWVTQIAT + +LSSSRDKT++VW
Sbjct: 2 VQEQMKLTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTILVW 45
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 200 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 310
H ++ QIA NP+ P+M +S S DKTL VWKL E+
Sbjct: 233 HAHYIMQIAVNPEDPEMFVSGSLDKTLKVWKLGEQES 269
>AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical
protein Y39H10A.6 protein.
Length = 684
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 182 RGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
R +L GH G V +A NP P M++S D T+ VW L R E
Sbjct: 558 RYSLVGHRGHVNAVAWNPADPTMLVSCGADATIRVWSLDRSE 599
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 179 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 316
++ + GH +V QIA NPK + ++S DKT+ VW+ + N+
Sbjct: 134 MKQSFEGHTHYVMQIAINPKDNNTFATASLDKTVKVWQFGSNVPNF 179
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
TL+ HN + Q++ +P Y ++ SS D +IVW +++
Sbjct: 303 TLKHHNDEIFQVSFSPHYETVLASSGSDDRVIVWDISK 340
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLK 331
T GH V I NP ++ + S DKT+ +W + R+ YTLK
Sbjct: 259 TAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDM-RNMRKKMYTLK 305
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
GH G V + NP P I SS L VW+++
Sbjct: 365 GHTGKVADFSWNPNRPWTICSSDEFNALQVWEVS 398
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
TL H WV +A +PK ++S + DKTL VW+L+
Sbjct: 327 TLLAHENWVRGLAFHPK-GKYLISVADDKTLRVWELS 362
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
T RGHN WV I + + S+S D+T+ VW
Sbjct: 228 TFRGHNDWVRMIRIS-NDGTLFASASLDQTVTVW 260
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
+L+GH V+ + P D +LS+SRD T+ W ++
Sbjct: 186 SLKGHEHTVSSVTFLPT-GDFVLSASRDHTIKQWDIS 221
>Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLKG 349
L+GH ++ NP +ILS+S D+T+ W + ++N G K KG
Sbjct: 168 LKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKG 220
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
GH ++ + NP P ++ S S D L VW++
Sbjct: 364 GHTAKISDFSWNPNEPWVVCSVSEDNILQVWQM 396
>AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLKG 349
L+GH ++ NP +ILS+S D+T+ W + ++N G K KG
Sbjct: 168 LKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKG 220
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
GH ++ + NP P ++ S S D L VW++
Sbjct: 364 GHTAKISDFSWNPNEPWVVCSVSEDNILQVWQM 396
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
TL H WV +A +PK ++S + DKTL VW+L+
Sbjct: 327 TLLAHENWVRGLAFHPK-GKYLISVADDKTLRVWELS 362
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
T RGHN WV I + + S+S D+T+ VW
Sbjct: 228 TFRGHNDWVRMIRIS-NDGTLFASASLDQTVTVW 260
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
+L+GH V+ + P D +LS+SRD T+ W ++
Sbjct: 186 SLKGHEHTVSSVTFLPT-GDFVLSASRDHTIKQWDIS 221
>AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic
multivulva protein LIN-53 p48 protein.
Length = 417
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLKG 349
L+GH ++ NP +ILS+S D+T+ W + ++N G K KG
Sbjct: 168 LKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKG 220
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
GH ++ + NP P ++ S S D L VW++
Sbjct: 364 GHTAKISDFSWNPNEPWVVCSVSEDNILQVWQM 396
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 191 LRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVW 289
L GH+G V +++ +PKY ++ S+S DK +I+W
Sbjct: 54 LVGHSGPVWKVSWAHPKYGGLLASASYDKKVIIW 87
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 191 LRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVW 289
L GH+G V +++ +PKY ++ S+S DK +I+W
Sbjct: 54 LVGHSGPVWKVSWAHPKYGGLLASASYDKKVIIW 87
>AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical
protein T02H6.1b protein.
Length = 528
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 185 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 304
GT G W+ +A P Y D++ S S + L +WK++ +
Sbjct: 375 GTQNGSGRWIVALAVLP-YSDLLASGSNEGELKLWKISEN 413
>AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical
protein T02H6.1a protein.
Length = 550
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 185 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 304
GT G W+ +A P Y D++ S S + L +WK++ +
Sbjct: 375 GTQNGSGRWIVALAVLP-YSDLLASGSNEGELKLWKISEN 413
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
L+GH + ++ + Y ILSS D+T+ +W L+R+E
Sbjct: 713 LKGHTADILDVSWSKNY--FILSSGMDRTVKLWHLSRNE 749
>Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical
protein F32H2.4 protein.
Length = 298
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 200 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
H+ V Q+A + K P++ S+S D+ + VW + + +
Sbjct: 46 HSSSVEQVACSEKQPNLFASASADRNICVWDIRQSK 81
>U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily
assigned gene nameprotein 345 protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 197 GH-NGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENN 313
GH NGWV + NP + +S S DKT +W + +++
Sbjct: 364 GHQNGWVEAVKWNPLDTNQFVSVSTDKTAKMWDVRSSKSS 403
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
L+GH + ++ + Y ILSS D+T+ +W L+R+E
Sbjct: 713 LKGHTADILDVSWSKNY--FILSSGMDRTVKLWHLSRNE 749
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 194 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
RGH V+ + +P D+ILS+S DK++ VW + +
Sbjct: 248 RGHYNNVSSVIFHPN-ADLILSNSEDKSIRVWDMQK 282
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
L GHN +V +P D++ S+S D+T+ VW ++
Sbjct: 133 LTGHNHYVMCAQFHPT-EDLVASASLDQTVRVWDIS 167
>U41007-1|AAA82264.1| 326|Caenorhabditis elegans Hypothetical
protein C33H5.7 protein.
Length = 326
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 194 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLKGAFGPQ 364
+GH+ VT I +P DM LS + DKT+ +W L + N G A F P+
Sbjct: 109 QGHDKLVTGINVSPM-DDMFLSVAEDKTIRLWDL-KTHNCIGLMNLSATPIATFDPE 163
>AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical
protein Y48B6A.1 protein.
Length = 674
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
+RGH G V I P+ +++ S D T+ +W +
Sbjct: 340 MRGHTGQVRAITVEPERGELLASGGEDGTVRIWMI 374
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 200 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 301
H+ +T AT+PK + I + SRD +L +W++ +
Sbjct: 1334 HSDEITCFATSPKGGNFIATGSRDMSLKIWQIDK 1367
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 185 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLK 346
G GH VT + + +LS+S+D+T+ VW L + N G +A ++
Sbjct: 312 GVFAGHRDGVTHVDSRQD-ERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQ 364
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 185 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLK 346
G GH VT + + +LS+S+D+T+ VW L + N G +A ++
Sbjct: 353 GVFAGHRDGVTHVDSRQD-ERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQ 405
>Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 116 LTLQWXS-LLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
L+ W S ++ P ++++ + GH V +A+ P P+ LS+S DKT+ +W
Sbjct: 133 LSGSWDSNVIIWPITELNSSSFTTIVCPGHTLSVWALASFPDLPNTYLSASADKTIRMW 191
>Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 116 LTLQWXS-LLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
L+ W S ++ P ++++ + GH V +A+ P P+ LS+S DKT+ +W
Sbjct: 133 LSGSWDSNVIIWPITELNSSSFTTIVCPGHTLSVWALASFPDLPNTYLSASADKTIRMW 191
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 170 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
T ++ TL+GHN +V NP+ +++S S D+++ +W
Sbjct: 160 TSRMTKTLKGHNNYVFCCNFNPQ-SSLVVSGSFDESVRIW 198
>U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical
protein ZK430.7 protein.
Length = 444
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 188 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 307
+L GH V +A +P P + S +RD + +W L E
Sbjct: 61 SLDGHVDGVQVLAKHPNRPSTVFSGARDGQVKIWNLASRE 100
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 176 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
KL T RGHN V + PK + LS S D + +W++
Sbjct: 266 KLVHTYRGHNKGVNFLQWFPKSAHLFLSCSMDTKIKLWEV 305
>Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 170 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
++K L GH+ +T + + + +++S+SRD T++VW L+
Sbjct: 574 SMKKLSVLNGHSDAITCLVSCQSHA-VLVSASRDLTVLVWHLS 615
>Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
GH V +A+ P P+ LS+S DKT+ +W
Sbjct: 163 GHTLSVWALASFPDLPNTYLSASADKTIRMW 193
>Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVW 289
GH V +A+ P P+ LS+S DKT+ +W
Sbjct: 163 GHTLSVWALASFPDLPNTYLSASADKTIRMW 193
>U41007-2|AAA82265.1| 248|Caenorhabditis elegans Hypothetical
protein C33H5.6 protein.
Length = 248
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +2
Query: 197 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKAXLKGAFGP 361
GH V I TNPK + LSSS D + ++ TR NYG L AF P
Sbjct: 109 GHRMPVNFIRTNPKDREKFLSSSVDGEIRMFD-TRTFENYGCLLAGHTPLIAFDP 162
>AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 170 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 298
++K L GH+ +T + + + +++S+SRD T++VW L+
Sbjct: 574 SMKKLSVLNGHSDAITCLVSCQSHA-VLVSASRDLTVLVWHLS 615
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL-TRDENNYGYTL 328
+RGH V + + ++ S S+D ++I W+L T EN+ TL
Sbjct: 356 IRGHTESVLSVVSPTWDTSLLASCSKDNSIIFWRLVTSPENDSCSTL 402
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 292
++GH+ WV + ++L++S DKT I+WK
Sbjct: 283 MQGHDDWVHSTVWSND-GRVLLTASSDKTCIIWK 315
>Z81522-7|CAB04232.1| 297|Caenorhabditis elegans Hypothetical
protein F32B4.6 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +2
Query: 212 VTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTLKKA 337
VTQ+AT P+Y SSR K+LIV D + GY LK+A
Sbjct: 120 VTQLATTPEY------SSRIKSLIV----EDMSPLGYPLKRA 151
>Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical
protein F53C11.8 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 191 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 295
LR H G V IA P P I ++ D ++W L
Sbjct: 308 LRNHTGPVNGIAWAPHSPHHICTAGDDSQALIWDL 342
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 170 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGYTL 328
T K L GH+ V +A N D I S SRD+T++ + D+N+ G L
Sbjct: 469 TQKKTRELTGHSSRVGCLAWNA---DTICSGSRDRTIMHRDIRCDDNDMGRKL 518
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,099
Number of Sequences: 27780
Number of extensions: 224432
Number of successful extensions: 555
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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