Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J05
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical...    88   7e-18
U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical
           protein Y116A8C.27 protein.
          Length = 269

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
 Frame = +1

Query: 277 KRFYRGTAVIQNDNK------WEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNET 438
           K+FY+  +VI   ++       +V LDHR LKT  G VL + + PLA A+A EW SQ+E 
Sbjct: 24  KKFYKEVSVINETDESTGNQIHKVLLDHRVLKTQGGQVLKLDSYPLALAIAEEWSSQDEF 83

Query: 439 ISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXXKWTP 618
           +    M LT L  TA DNP + T+  I   +L+Y   DT+LF++            KW P
Sbjct: 84  LQLGQMRLTGLAFTAQDNPLEQTADTISQKILDYVEGDTVLFFNTESSKLHRYQEEKWAP 143

Query: 619 ILDWFQKTFNVKQELANSIQPPXVFTET-RAVLARHFLSYDFAALTAI 759
           ++        +K   + +I    V +E  +  + R    ++F AL  +
Sbjct: 144 LIKNLNNDLGIKVRPSENILDCDVASENDKEKIDRWIRQHNFPALVGL 191


>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 319 KWEVTLDHRRLKTPNGNVLTVGNEPLARA-VAVEWDSQNETISQATMHLTALCNTALDNP 495
           K+  ++ + +LKT + N++  GN+PL R    +    +++     +M + A+  + L N 
Sbjct: 411 KFFESMANEQLKTEDDNLICWGNQPLRRFWHTLIGTEEHDDKGHGSMEMLAV--SLLKNA 468

Query: 496 GKLTSHDIVNYLLEYYP 546
            ++   DI+N+    +P
Sbjct: 469 REVPKKDIINFDQSVHP 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,765,672
Number of Sequences: 27780
Number of extensions: 416736
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)