Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J04
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980           31   0.97 
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529...    31   0.97 
12_01_0378 - 2946916-2947590                                           29   6.9  

>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
          Length = 208

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +1

Query: 472 DDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVL-GVGTNWNGDHMAF 648
           DD R      +D+ S   +W +  L  N      + +    +YL       +WN + +  
Sbjct: 24  DDDRSGVSLQQDRASVHAAWAVHILHFNGGDVLMLHSAANGRYLAAYRAEGSWNVERL-- 81

Query: 649 GVNSVDSFRAQWYLQPAKYDNDVL 720
            +N + S    WY   ++Y +DVL
Sbjct: 82  NLNRLPSLTFSWYALGSRYGDDVL 105


>03_02_0054 +
           5292167-5292336,5292434-5292526,5292828-5293003,
           5293076-5293122,5293732-5293801,5293960-5294186,
           5294274-5294327,5294470-5294545,5294679-5294884
          Length = 372

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = +3

Query: 9   SXYXSHYRESLKILSSFLX*HTGLDAPKMKPAIVILCLFVASLYAA------DSDVPNDI 170
           S + S+ R   +I S F   H+ L  PK   A   L   VASL  A      + ++P +I
Sbjct: 176 SSFLSNLRSHDQISSIFWLIHSDLHEPKFSRAFECLSTMVASLEPAVVDSVYEEEIPGNI 235

Query: 171 --LEEQLYNSVVVADYDSAVEKSKHLYEE 251
             LEE    +           + KHLYEE
Sbjct: 236 SFLEENYSKAKFYLRLKRRNGRVKHLYEE 264


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = +3

Query: 24  HYRESLKILSSFLX*HTGLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVV 203
           +YR ++ +         G+    ++P +++L    ASL AA++ VP    + ++  +VV 
Sbjct: 70  YYRLAVNVTMYNPSGRAGVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVA 129

Query: 204 ADYD 215
            D+D
Sbjct: 130 IDFD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,967,792
Number of Sequences: 37544
Number of extensions: 433244
Number of successful extensions: 1220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)