Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J01
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   3.6  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.3  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   6.3  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   8.4  

>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 59  SSSETCHKSK*IPNYYISSPRSWCVSTQKFIGSTKKDIQLADISQSDTRVTSPGTNKWRR 238
           SS+    K K I +  +S  R + V  Q+ I  T+ D+Q       +     PG  K RR
Sbjct: 114 SSTFDLQKIKKIHDCLLSEYRKY-VRYQERIEETRPDLQKQLTDLKNPIEWYPGARKLRR 172

Query: 239 EGLRHAGP 262
             + H GP
Sbjct: 173 HIIMHVGP 180


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 542 FETIPPAERRVFLSRSHTPEPVAV 471
           +ET PP+ERRV L R+   EP A+
Sbjct: 117 YETSPPSERRV-LDRTSKEEPWAL 139


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 653 GKRLLFRSMMS*RDLLDHQSWRNSAWTPTSGL 558
           G+RL    +M+    L  +S+ N AW+  SGL
Sbjct: 83  GRRLFLVCLMAATKFLQDRSFSNRAWSRLSGL 114


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 155 STKKDIQLADISQSDTRVTSPGTN 226
           +T+KDI  A IS S   VTS GT+
Sbjct: 486 TTQKDINHATISNSGILVTSSGTD 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,430
Number of Sequences: 5004
Number of extensions: 66180
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)