Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J01
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    28   8.8  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.8  
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086...    28   8.8  
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    28   8.8  
01_03_0238 + 14080541-14080645,14080854-14081666                       28   8.8  

>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
 Frame = +1

Query: 343 PTAPGXLGPAGDSTNYGG----------RLDWANKNAEAAIDINRQIGGRSGMTATGSGV 492
           PT+ G  G  G+   +GG           L   ++ A+ ++++  Q+GG  G+ + G G 
Sbjct: 102 PTSAGEFGGGGEVRVWGGGNRSGEAAFISLQSGSRVAKRSMELGVQMGGEMGLGSNGGG- 160

Query: 493 WDLDKNTRLSAGGMVSKEFGHRRPD 567
                     AGG V  E  HR  D
Sbjct: 161 ---------GAGGQVHDEMPHRNVD 176


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 379  STNYGGRLDWANKNAEAAIDINRQI 453
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


>03_05_0558 -
           25606718-25606724,25606918-25606995,25608552-25608665,
           25608755-25609266
          Length = 236

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = -2

Query: 574 RRRPVFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPHSYWPSLDV 395
           +R  VF D  P R    L G C+C D          Q+C R + +      ++Y   LDV
Sbjct: 135 QRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEYNYVALLDV 189

Query: 394 HRSLYCPLQ 368
            +  YC  Q
Sbjct: 190 PKQNYCEYQ 198


>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 180 ANWISFFVLPINFCVDTHQDRGEEI 106
           A W  F  LP  + +D H DR E++
Sbjct: 69  ALWAHFHRLPARYALDVHADRAEDV 93


>01_03_0238 + 14080541-14080645,14080854-14081666
          Length = 305

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +1

Query: 274 GFLVKPVTTERSSMMTAAN*PGRPTAPG---XLGPAGDSTNYGGRLDWANKNAEAAIDIN 444
           G+L K      SS+M     PG+ T PG    LG     T   G L + +    A ID +
Sbjct: 27  GYLWKGQEESTSSVMVRTLTPGQQTGPGRDALLGGGRSCTLMRGTLGFRSLKPYATIDGS 86

Query: 445 RQIGGRSGM 471
               GRS M
Sbjct: 87  AGYKGRSPM 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,952,008
Number of Sequences: 37544
Number of extensions: 484770
Number of successful extensions: 1446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)