Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I24
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.032
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.69 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = +1

Query: 469 GGXNGPPPGXXGVXRXXXGGXRGTPXXXXGGPXGGXXGXXGG 594
           GG  GPPPG  G       G  G      GG  GG  G  GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 525 GXXGXPXXXXXGPPXGXXGRXXGGXXPGXAGEXPGXPGXP 644
           G  G P     GP     G    G  PG  G  PG  G P
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 624 PGXPGXPXKKXXPXXXPPXKXXPPPPPXXXNKK 722
           PG P  P     P   PP +  PPPPP    K+
Sbjct: 6   PGNP--PPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 637 PGXPGXSPAXPGXXPPXXRPXXPXGG 560
           PG P   P  PG  PP   P  P  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = -2

Query: 618 PPXXRXXXPPXXAPXXPXGAPXXXXGGXPXSPGXXTXNPXXPGGGPVXPP 469
           PP      PP   P  P   P       P  P      P  P G P  PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPP 468



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 593 PPXXPXXPPWGPPXXXXGVPRXPP 522
           P   P  PP  PP    G P  PP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPP 448


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 618  PPXXRXXXPPXXAPXXPXGAPXXXXGGXPXSPGXXTXNP 502
            PP      PP  AP  P G P       P S      NP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,637
Number of Sequences: 5004
Number of extensions: 19416
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)