Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I22
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    28   1.6  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    28   2.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.8  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   6.5  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   8.5  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   8.5  

>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -1

Query: 809 FYIIQEYMEH*HFGIMN*ISLVIYELHSVAYIIMRXXXXXXXXXKTITLFITF*WNLWLE 630
           FY I E +E  H+   N    ++Y L  V Y   +         K+  L   F W+ WLE
Sbjct: 155 FYYISEVLESLHYQ-GNKDPYLLY-LSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLE 212

Query: 629 LSLKI 615
           LSL I
Sbjct: 213 LSLSI 217


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +3

Query: 132 ITKQNGP*AENAYRQRDRQ*KHHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVP 311
           +TK   P ++ A +  D   +H N+G  T  Y G   P+     +   L    V  C   
Sbjct: 46  VTKAYYPSSQQALKLYDLLREHRNKGTATLTY-GVVDPVLASQASKAGLETIFVSGCLCG 104

Query: 312 DNPINKTSLNHED-NWRT---AIENTIK*QHYPSKVRHNLH 422
            + +++  ++H D  W T   A++   + Q++ ++ +   H
Sbjct: 105 LSSVDEPGMDHADYPWDTVPKAVDRIFRSQNWHARRQKQFH 145


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 171 RQRDRQ*KHHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 329
           + + RQ K + E       + ++R I C  L PC   ++S   C  P++PI +
Sbjct: 2   QMKPRQDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 263 QGATGYWSSFSLVVLGTFPLIVMFLLA 183
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 315 YLEH-SRATHYEDEESKEP 262
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 877 FFQXTIDKGMNFLTSINALKYYYFTLYK-NIWNIDILGL*TRFPWSSMNFTQSHT 716
           + + T+++  N   +   L Y +  L+   +W + + G  ++FP + +    SHT
Sbjct: 640 YLKTTLNRLYNSKLTRKVLYYLFSPLFTLELWKLRVRGALSKFPTNCLRSVYSHT 694


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 246 ISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHED 350
           I CG LA   + L  V L  VPDNP     L  ED
Sbjct: 227 IICGVLA---IFLGFVILAVVPDNPFKAWFLTEED 258


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 847 NFLTSINALKYYYFTLYKNIWNIDIL 770
           +F++    LKY  FT  KN+ NID L
Sbjct: 635 SFISEKLKLKYQQFTTLKNLKNIDSL 660


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 647 WNLWLELSLKIILKKRQKFIE 585
           WN+WL    KI  K++ KF E
Sbjct: 370 WNMWLSQVQKINEKEKDKFYE 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,247
Number of Sequences: 5004
Number of extensions: 75751
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)