Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I18
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624...   121   7e-28
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   6.5  
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219...    29   6.5  
05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757           29   6.5  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           29   6.5  
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912...    28   8.6  

>02_04_0655 +
           24761323-24761424,24761565-24761675,24762361-24762472,
           24763049-24763113,24763727-24763804,24764550-24764624,
           24764747-24764899,24764988-24765122,24765325-24765495
          Length = 333

 Score =  121 bits (292), Expect = 7e-28
 Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
 Frame = +2

Query: 338 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDT-NALSG-FKAD-EYVVKAQILAGGRGK 508
           R LN+ E+   +L+ KY +++       S  +  N L   F ++ E VVK+QILAGGRG 
Sbjct: 26  RRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGL 85

Query: 509 GHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 688
           G F +G +GGVH+ K  ++   LA  M+G  L+TKQT  +G +V+KV + E +++  E Y
Sbjct: 86  GTFKSGLQGGVHIVK-AEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144

Query: 689 FSIVMERSFNGAAIVASPAGGMDIXAVAEKXPHLVKTVPVDILKGL 826
           F+I ++R+  G  I+A   GG  I  +AEK P ++  VP+D+ KG+
Sbjct: 145 FAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGI 190


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 299 LASSTYC-PRVISTRHLNLQEHHSKDLLRKYQVSIQDF 409
           LA+++ C PR +   H+ ++ HH+ D+ +     +Q F
Sbjct: 263 LATTSRCKPRAVQAAHIRIKGHHASDIYQVGHAILQAF 300


>06_01_0303 +
           2194345-2194414,2195228-2195328,2195818-2196657,
           2196743-2196889,2196985-2197365
          Length = 512

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 680 ETYFSIVMERSFNGAAIVASPAGGMDIXAVAEKXPHLVKTVPV 808
           ET++  VM+R     +I A PA   D+ ++ E+  H +K+V V
Sbjct: 381 ETFYLTVMQRYVQNVSIFAHPA---DLRSIREEQHHSLKSVRV 420


>05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757
          Length = 301

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -1

Query: 813 ISTGTVFTKCGXFSATASISIPPAGEATMAAPLKLLSITILKYVSLLIFTLSATITLFTK 634
           IS     T    F+ATA ++    GE T AAP  L +  I+  V LL         LF+ 
Sbjct: 84  ISVAVPVTNATTFAATA-VAAALLGEGTRAAPAALGTALIVLGVWLLEMMNELWSNLFST 142

Query: 633 IPSLGV 616
           +  LG+
Sbjct: 143 VAVLGI 148


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 230 WLRFS*NKIMAAFKNLKSFKLINLASSTYCPRV-ISTRHLNLQ 355
           W R + N+I  AF+NL++ ++I    S +   + + TRHL LQ
Sbjct: 287 WDREAYNQIHDAFQNLQASRIIITTRSKHVAALALPTRHLKLQ 329


>01_02_0039 -
           10490522-10490606,10490674-10490810,10491107-10491248,
           10491355-10491419,10491528-10491641,10491846-10492119,
           10492215-10492327,10492405-10492499,10492602-10492662,
           10492774-10493103
          Length = 471

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 532 RGSSSYKKSGQDCRLS 579
           +GSSSYKK+G+ C +S
Sbjct: 122 KGSSSYKKNGESCSIS 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,598,657
Number of Sequences: 37544
Number of extensions: 360955
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)