Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I18
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical pr...   171   6e-43
Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...   130   1e-30
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    30   2.5  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    30   2.5  
U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical
           protein C50F7.4 protein.
          Length = 415

 Score =  171 bits (416), Expect = 6e-43
 Identities = 86/166 (51%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
 Frame = +2

Query: 338 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNAL-SGFKADEYVVKAQILAGGRGKGH 514
           R LNLQE  SK++L K+  S+Q+F +  ++ +       F   EYVVKAQILAGGRGKG 
Sbjct: 18  RFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVVKAQILAGGRGKGK 77

Query: 515 FDNGFKG--GVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 688
           F NG KG  GV +TK +D  ++    MIG +L+TKQT  EG+ V+KVM+AE V+IKRETY
Sbjct: 78  FINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETY 137

Query: 689 FSIVMERSFNGAAIVASPAGGMDIXAVAEKXPHLVKTVPVDILKGL 826
            +++M+R  NG  +VASP GGMDI AVAEK P  +   P+DI  G+
Sbjct: 138 LAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGM 183


>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score =  130 bits (315), Expect = 1e-30
 Identities = 68/184 (36%), Positives = 104/184 (56%), Gaps = 1/184 (0%)
 Frame = +2

Query: 290 LINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRII-DSKLDTNALSGFKADE 466
           L+N +     P   + R L L EHH   +L+ Y++ +  F +  D++   +        +
Sbjct: 9   LLNTSQKFMAP---AARTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKD 65

Query: 467 YVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNK 646
           YVVKAQ+LAGGRGKG F +G +GGV +    D++   A  MIG  LITKQT   G    +
Sbjct: 66  YVVKAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEE 125

Query: 647 VMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIXAVAEKXPHLVKTVPVDILKGL 826
           VMV + +  +RE YFSI ++R+ NG  ++AS  GG++I  VA   P  +  +P+D+  G+
Sbjct: 126 VMVCKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGI 185

Query: 827 VTKL 838
             +L
Sbjct: 186 TKEL 189


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 778 FFSHCXYIHTSSWRSYNGCTIKTSLHYNTKVCLSFDIHTFCDH 650
           F  +C +I      +YN      + +Y  K+  SF+ H  CDH
Sbjct: 736 FRVYCSHIKDVLINAYNSHAKSNAFYYYNKITGSFEEHVGCDH 778


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 778 FFSHCXYIHTSSWRSYNGCTIKTSLHYNTKVCLSFDIHTFCDH 650
           F  +C +I      +YN      + +Y  K+  SF+ H  CDH
Sbjct: 736 FRVYCSHIKDVLINAYNSHAKSNAFYYYNKITGSFEEHVGCDH 778


>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -1

Query: 873 GSLNSKIQXFHCNLVTNPFKISTGTVFTKCGXFSATASISIPPAGEATMAAPLKLLSITI 694
           GS+  ++Q    N   +P  +S  T  T      +T + ++ P        P ++  +  
Sbjct: 10  GSMPEEVQTLLTNSEMDPGLLSNETATTMITDVISTTTTTLAPVLIGYQPNPFRIGLLAF 69

Query: 693 LKYVSLLIFTLSATI 649
              + +LIFTLS TI
Sbjct: 70  KCLLIILIFTLSCTI 84


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 828  TNPFKISTGTVFTKCGXFSAT-ASISIPPAGEATMAAP 718
            TNP   STG+  T+   FS+T AS S  P   +T A P
Sbjct: 906  TNPNTGSTGSTVTQPSAFSSTSASSSTQPIASSTTANP 943


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,301
Number of Sequences: 27780
Number of extensions: 347498
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)