Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I15
         (943 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    67   2e-11
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    67   2e-11
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.6  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.4  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   8.4  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   8.4  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 26/30 (86%), Positives = 30/30 (100%)
 Frame = +1

Query: 145 PIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 234
           P+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 26/30 (86%), Positives = 30/30 (100%)
 Frame = +1

Query: 145 PIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 234
           P+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 650 KXPPPPGKGXXXFWXPXPXPPP 715
           + PPPP  G    W P P PPP
Sbjct: 286 RPPPPPSSG---MWPPPPPPPP 304


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 650 KXPPPPGKGXXXFWXPXPXPPP 715
           + PPPP  G    W P P PPP
Sbjct: 296 RPPPPPSSG---MWPPPPPPPP 314


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +1

Query: 616 GGGGGXFFXXXKXXXXXGERGFXFLXPXPXPPPQKPXXXXXXGGGGXXXXXXPXGG 783
           GGGGG            G        P P PPP  P       GGG        GG
Sbjct: 277 GGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPPAPAPVSSGGGYSEQSSGGGG 332


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +1

Query: 616 GGGGGXFFXXXKXXXXXGERGFXFLXPXPXPPPQKPXXXXXXGGGGXXXXXXPXGG 783
           GGGGG            G        P P PPP  P       GGG        GG
Sbjct: 277 GGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPPAPAPVSSGGGYSEQSSGGGG 332


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 620 GGGGXFFXXKKXPPPPGKGXXXFWXPXPXPPP 715
           G GG        PPP G G   F  P P PPP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGG--FMPPPPPPPP 681


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 620 GGGGXFFXXKKXPPPPGKGXXXFWXPXPXPPP 715
           G GG        PPP G G   F  P P PPP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGG--FMPPPPPPPP 681


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,807
Number of Sequences: 27780
Number of extensions: 230373
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)