Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I13
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 120  KIIKTERTASRLNKLNRKG 64
            K +K   TAS  N+LNR+G
Sbjct: 1136 KGLKLATTASHANQLNRQG 1154


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 706 ILLVFXFIYQSCPHPGR-NWLLSSQ 777
           ILL+F  +  SC  P R N + SSQ
Sbjct: 5   ILLLFFLLLSSCTRPSRGNAVPSSQ 29


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 706 ILLVFXFIYQSCPHPGR-NWLLSSQ 777
           ILL+F  +  SC  P R N + SSQ
Sbjct: 5   ILLLFFLLLSSCTRPSRGNAVPSSQ 29


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 546 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 448
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 546 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 448
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -3

Query: 207 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 103
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,678
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)