Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I11
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.8  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    27   5.0  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   5.0  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   6.7  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   6.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.7  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    26   6.7  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.8  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 588 PVLCALRSMSWRRILLEYPVPVIEHGMRNRFH 683
           P +CA     W    LE  +P+  H  +N  H
Sbjct: 58  PTICAKLEKKWNAYCLENNIPISTHNEQNDSH 89


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 807 MTSLDTRNTGARFFTTGVRTPYHLVGVALFYGKTFHPK 920
           M +      G++FF T V TP HL G  + +GK    K
Sbjct: 103 MANAGPNTNGSQFFITTVPTP-HLDGKHVVFGKVIQGK 139


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 599 TQDWLAAREIDFIRHEDWPSSSPD 528
           T ++L   +IDF+ H+D P +S D
Sbjct: 171 TPEFLEEHKIDFVAHDDIPYASDD 194


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = -2

Query: 238 TKLTRDQLNVAYYGNLV*STSCSYKFYIRTRSIHFLNSNLTLQLFTGVMSTSILNSTLEI 59
           T   R ++NV  +GNL    SC ++            +  ++ +F G      ++  LE+
Sbjct: 788 TDSVRSRINVVKFGNLNSLLSCLHELIQPATLTPSFETEKSITMFLGCRDKQAVSEKLEV 847

Query: 58  SA 53
           +A
Sbjct: 848 AA 849


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 729 KNECSCVSKYSPDEPCGT 676
           + +C CV K+SPD  C +
Sbjct: 243 EKDCRCVRKFSPDGSCNS 260


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 725 FLHLSHKNVPLLSPNKKLPTIP*ARMENDLXGHAEYXCSLLHYWCAY 865
           F+ +    +PL +P    P  P    E++    AE  CS+ ++ C+Y
Sbjct: 198 FITIVGNFIPLFTPRVWYPLFP----EDNYQPSAEQVCSMFNFACSY 240


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 545 ASLRAG*SRFHAPPASLVCSSLYELAP 625
           A L A  +R HA P  +VCS +Y+L+P
Sbjct: 293 AQLVAQAARHHATPV-VVCSGIYKLSP 318


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 172 SYKFYIRTRSIHFLNSNLTLQL 107
           SYKF++RT  + FLN N TL L
Sbjct: 580 SYKFWLRTYRVFFLN-NGTLPL 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,919,924
Number of Sequences: 5004
Number of extensions: 85227
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)