Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_I11
(938 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 83 2e-16
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 52 6e-07
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 52 6e-07
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 52 6e-07
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 43 3e-04
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 43 3e-04
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 43 3e-04
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 39 0.006
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 29 6.3
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 83.4 bits (197), Expect = 2e-16
Identities = 48/131 (36%), Positives = 68/131 (51%)
Frame = -1
Query: 911 KSFTVEESYTNQMIRCTHTSSEEASTXIPRVQXGHFPSLLMVWLGVSYWGLTEVHFCEKG 732
K F +E+S+ Q R + ++ S RVQ +P +MV+ G++ G T + F +G
Sbjct: 222 KIFCIEQSFNTQNDR-VYAKTQPNS----RVQRTGYPKGIMVFAGITANGKTPLIFVPQG 276
Query: 731 VKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHE 552
+K N Y + + T L+ P F W FQ D APAH+ K+ Q W + DFI
Sbjct: 277 IKVNGNNYLDMLKTELM-PWVKKHFKKTKWTFQQDGAPAHKHKNVQAWCESNFPDFIAFN 335
Query: 551 DWPSSSPDLNP 519
WP SSPDLNP
Sbjct: 336 QWPPSSPDLNP 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 525 ESDMDLVRAAIDDWPRRLKACIQSHGGHFE 436
E ++ +RA +D +P+R++ CI++ G FE
Sbjct: 419 ELEIPYLRATVDAFPKRVRVCIEADGDIFE 448
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 52.0 bits (119), Expect = 6e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = -1
Query: 794 LMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQ*DSAPA 615
+MVW + E+ F K N+ YQN + L + + H ++ + + FQ D+A
Sbjct: 180 VMVWGAFTEKKKLEIQFVSS--KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNATI 235
Query: 614 HRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
H + ST+D+ ++I+ + DWP+ SPDLNP
Sbjct: 236 HVSNSTRDYFKLKKINLL---DWPARSPDLNP 264
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 52.0 bits (119), Expect = 6e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = -1
Query: 794 LMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQ*DSAPA 615
+MVW + E+ F K N+ YQN + L + + H ++ + + FQ D+A
Sbjct: 180 VMVWGAFTEKKKLEIQFVSS--KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNATI 235
Query: 614 HRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
H + ST+D+ ++I+ + DWP+ SPDLNP
Sbjct: 236 HVSNSTRDYFKLKKINLL---DWPARSPDLNP 264
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 52.0 bits (119), Expect = 6e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = -1
Query: 794 LMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQ*DSAPA 615
+MVW + E+ F K N+ YQN + L + + H ++ + + FQ D+A
Sbjct: 310 VMVWGAFTEKKKLEIQFVSS--KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNATI 365
Query: 614 HRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
H + ST+D+ ++I+ + DWP+ SPDLNP
Sbjct: 366 HVSNSTRDYFKLKKINLL---DWPARSPDLNP 394
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLL---DWPSQSPDLNP 210
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 211 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNP 251
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNP 280
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLL---DWPSQSPDLNP 280
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNP 210
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNP 210
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 650 RHWVFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
R +VFQ D+ P H + + W R + + DWPS SPDLNP
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRHVHLL---DWPSQSPDLNP 280
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -1
Query: 641 VFQ*DSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNP 519
+F D+A H + ST+D+ ++I+ + DWP+ SPDLNP
Sbjct: 39 IFCQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNP 76
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 451 VTLNTGLQSARPVVYRSTNE 510
VT N LQSA P+VY++T+E
Sbjct: 35 VTDNASLQSADPIVYKATSE 54
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 688 TLWNLFLIPCS---ITGTGYSNKIRRQLIERRAHKTGWRRVKST 566
T W+ F + CS +T G+S+K +RQ + + + W ++ ++
Sbjct: 171 TPWSPFQLDCSCLTVTCDGFSSKFKRQRVGASSGRFSWFKINTS 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,619,882
Number of Sequences: 27780
Number of extensions: 478250
Number of successful extensions: 1104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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