Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I11
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.57 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.57 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.75 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 540 LQSRFESDMDLVRAAIDDWPRRLK 469
           L S+F +    + AA+D+WPR L+
Sbjct: 389 LDSQFCTVEGFITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 540 LQSRFESDMDLVRAAIDDWPRRLK 469
           L S+F +    + AA+D+WPR L+
Sbjct: 442 LDSQFCTVEGFITAAVDEWPRLLR 465


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 175 CSYKFYIRTRSIHFLNSNLTLQLFTGVMSTSILNSTLEI 59
           C Y   +R  S H + +N+T+QL   +M      S +E+
Sbjct: 53  CEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMEL 91


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -1

Query: 797 LLMVWLGVSYWGLTEVH 747
           LL+++LG++  G+T++H
Sbjct: 5   LLLMYLGITCQGVTDIH 21


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 526 KSGLEEGQSSCRMKSISRAASQSCVLFAL*AGAESY 633
           K+GL + Q +    SIS+   +  +L+ +  GA+ Y
Sbjct: 82  KAGLVQPQGTTFSNSISQLRKEVSLLYRILLGAKDY 117


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 692 TNLVEPVSHTMFNNRHWVF 636
           + ++ PVS  +FN  +W+F
Sbjct: 468 SRIIFPVSFMLFNAIYWIF 486


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 516 CRIQIWTGGGPVFVPDEVDFTRRQP 590
           C +++    G V+  DEV+F +R+P
Sbjct: 561 CFMRVENVKGAVWTVDEVEFYKRRP 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,719
Number of Sequences: 438
Number of extensions: 6160
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)