Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_I09
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.011
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.099
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.53
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = -3
Query: 512 PXPPPPXGGGXFFXXKTKPPPPXPGXXXKXKRPAPXXPG 396
P PPPP G F PPPP PG K K P G
Sbjct: 10 PPPPPPPG---FEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 772 PXTPXSXXPPP--XPPPKXPPXPPXKRGPXXKNKT 870
P P PPP PP + PP PP KNKT
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKT 40
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 780 PPXXXPPPGPPP-XXPPXXPXXTRPXXXKQNR 872
PP PPP PPP PP P P + R
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 472 PXKPNPPPPXXXXXXXXKGPPXXXPGF 392
P P PPPP + PP PG+
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGY 32
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.3 bits (70), Expect = 0.099
Identities = 26/89 (29%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Frame = +2
Query: 410 GRAFXXXXXXXGGGGGVWFXXXKXPPPPXGXGGXXXWXXXXXXXXKRGEXGXXGGG--GX 583
G F GG GG PP P G GG + G G GG G
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
Query: 584 PPPXXGGKXXXQXPGGKXGXKXGGKXGXP 670
P GG G G GG G P
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -2
Query: 906 GGPPPXXXXTXXGFVFXXGAAFXGGXXGGLXGGXRGGXX*XGGXG 772
GGPPP GF G G GG GG G GG G
Sbjct: 198 GGPPPGPGG-FGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -3
Query: 560 PVPPFXXXXXXXGXXXPXPPP-PXGGGXFFXXKTKPPPPXPGXXXKXKRPAPXXP 399
P PP P PPP P GG PPPP PG P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGP------PPPPPPPGVAGAGPPPPPPPP 782
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = -3
Query: 578 PPPXGXPVPPFXXXXXXXGXXXPXPPPPXGGGXFFXXKTKPPPPXPGXXXKXKRPAP 408
P P PVPP G P PPPP G PPP + PAP
Sbjct: 744 PAPAPIPVPP---PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Frame = +1
Query: 772 PXTPXSXXPPPXPPP-----KXPPXPP 837
P P PPP PPP PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 505 PXPPGGGGXFXPXKPNPPPP 446
P PP G P P PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 773 PXPPXHXXPPRXPPXXPPXXPPXNAAP 853
P PP P PP PP P ++AP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 773 PXPPXHXXPPRXPPXXPPXXPP 838
P P PP PP PP PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPP 437
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 783 PXXXPPPGPPPXXPP 827
P PPP PPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 778 TPXSXXPPPXPPPKXPPXPP 837
TP P P PPP PP P
Sbjct: 228 TPKQADPLPAPPPPPPPTLP 247
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 870 GFVFXXGAAFXGGXXGGLXGGXRGG 796
GF F GG GG GG RGG
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Frame = +1
Query: 772 PXTPXSXXPP-PXPPPKXPPXPPXKRGP 852
P P S PP P P PP PP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 836 GGXGGXXGGGXGGGXXXXGVXG 771
GG GG GGG GG G G
Sbjct: 30 GGRGGARGGGRGGARGGRGGRG 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.152 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,842
Number of Sequences: 5004
Number of extensions: 35542
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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