Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I09
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.24 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 768 GAXNPPXXXPPPGPPPXXPP 827
           G+   P   PPPG PP  PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.55
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 777 NPPXXXPPPGPPPXXPPXXPXXTRP 851
           +PP   P  GPPP  PP  P    P
Sbjct: 38  SPPN--PSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.73
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +1

Query: 781 PXSXXPPPXPPPKXPPXPPXKRGPXXKNKTXXGXXXGG--GGPP 906
           P S  P P P P   P  P +  P   ++   G   GG  G PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQ---GPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
 Frame = +1

Query: 772 PXTPXSXXPP---PXPPPKXPPXPPXKRGP 852
           P  P    PP     PPP  PP  P  + P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 773 PXPPXHXXPPRXPPXXPPXXPP 838
           P  P    PP  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 590 GGGXPPPXGXPVPP 549
           GG  PP  G P+PP
Sbjct: 406 GGQLPPSAGAPMPP 419


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 799 PPXPPPKXPPXPPXKRGP 852
           PP P P  PP PP   GP
Sbjct: 338 PPKPAP--PPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 778 TPXSXXPPPXPPPKXPP 828
           TP    PPP PP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 472 PXKPNPPPP 446
           P KP PPPP
Sbjct: 338 PPKPAPPPP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.152    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,952
Number of Sequences: 438
Number of extensions: 9245
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)