Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I08
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   5.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 855 PPPPPXPTXXXGXG 896
           PPPPP P    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 837 PXLPXXPPPPPXP 875
           P +   PPPPP P
Sbjct: 756 PIMGGPPPPPPPP 768


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 843 LPXXPPPPPXP 875
           +P  PPPPP P
Sbjct: 941 MPAFPPPPPPP 951



 Score = 21.0 bits (42), Expect(2) = 5.6
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 855 PPPPPXPTXXXGXG 896
           PPPPP P      G
Sbjct: 946 PPPPPPPPLVSAAG 959


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.6 bits (46), Expect(2) = 7.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 846 PXXPPPPPXP 875
           P  PPPPP P
Sbjct: 21  PSQPPPPPPP 30



 Score = 21.4 bits (43), Expect(2) = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 837 PXLPXXPPPPP 869
           P  P  PPPPP
Sbjct: 6   PGNPPPPPPPP 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,265
Number of Sequences: 5004
Number of extensions: 14434
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)