Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I08
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    23   3.8  
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    24   4.7  
02_01_0667 - 4958924-4959523                                           24   8.3  
01_05_0490 + 22672241-22674679                                         25   9.5  

>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 22.6 bits (46), Expect(3) = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 846 PXXPPPPPXP 875
           P  PPPPP P
Sbjct: 64  PPPPPPPPQP 73



 Score = 21.8 bits (44), Expect(3) = 3.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 837 PXLPXXPPPPP 869
           P  P  PPPPP
Sbjct: 49  PPQPTLPPPPP 59



 Score = 21.4 bits (43), Expect(3) = 3.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 855 PPPPPXPTXXXG 890
           PPPPP P    G
Sbjct: 65  PPPPPPPQPPVG 76


>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 24.2 bits (50), Expect(2) = 4.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 843 LPXXPPPPPXP 875
           LP  PPPPP P
Sbjct: 50  LPHQPPPPPPP 60



 Score = 23.4 bits (48), Expect(2) = 4.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 855 PPPPPXPTXXXGXG 896
           PPPPP P    G G
Sbjct: 81  PPPPPPPMGAPGFG 94


>02_01_0667 - 4958924-4959523
          Length = 199

 Score = 24.2 bits (50), Expect(2) = 8.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 837 PXLPXXPPPPP 869
           P LP  PPPPP
Sbjct: 120 PVLPPRPPPPP 130



 Score = 22.6 bits (46), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 846 PXXPPPPPXP 875
           P  PPPPP P
Sbjct: 124 PRPPPPPPIP 133


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 24.6 bits (51), Expect(2) = 9.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 846 PXXPPPPPXPT 878
           P  PPPPP PT
Sbjct: 638 PPQPPPPPPPT 648



 Score = 21.8 bits (44), Expect(2) = 9.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 837 PXLPXXPPPPP 869
           P  P  PPPPP
Sbjct: 604 PRRPPPPPPPP 614


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,499
Number of Sequences: 37544
Number of extensions: 246595
Number of successful extensions: 2615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)