Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_I06
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0218 + 18219956-18220555 32 0.71
08_01_0156 - 1233431-1233925 31 1.6
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 29 6.7
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.7
01_04_0020 + 15142402-15143421 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 8.8
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.8
03_04_0061 - 16949038-16950006 28 8.8
>06_03_0218 + 18219956-18220555
Length = 199
Score = 31.9 bits (69), Expect = 0.71
Identities = 28/90 (31%), Positives = 37/90 (41%)
Frame = -3
Query: 881 AASGDKSCLPGWTQDDSYPDKAQRSG*TGGSCTQPSLGANDLHRTEIPTA*AMRKRHASR 702
A G+ P T +D+ P + R+G G + A +T P R R R
Sbjct: 57 AGDGEVVATPLDTGEDASPVLSPRNG---GLTEGEEVAARPREKTARPDG--ARARRERR 111
Query: 701 REKGGQVSGKRQGRNRRAHEGASRGKRLVS 612
E G + KR+GR R G RGKR S
Sbjct: 112 LEAAG--AEKREGRRRGGSSGGLRGKRRAS 139
>08_01_0156 - 1233431-1233925
Length = 164
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 791 SCTQPSLGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRL 618
S T +LG D TE+ A A A+R E+ GG G R G RA + +G
Sbjct: 83 SPTATALGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAA 142
Query: 617 VSL*SCRVSPPLT 579
+ R SP ++
Sbjct: 143 DRVLGVRASPTVS 155
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 520 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 678
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 862 RVYRVGLKTIVTRIRRSXRAERGVRAHSPAWERTTYTEL-RYLQ 734
R YR L R+RR R + G AH+P W R T ++ RY++
Sbjct: 49 RPYRRLLHDEAQRLRRERRGQ-GSGAHTPRWVRRTPDQMARYVE 91
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 507
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_04_0020 + 15142402-15143421
Length = 339
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 770 PSWAVCTNPPFSPXAAPYPGNY 835
PS AV +PP P APY G Y
Sbjct: 234 PSNAVVAHPPVVPYGAPYGGGY 255
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 670 RLPDTCPPFSLREAWRFLIA-----HAVGISVRCRSFAPK 774
RL D C P L+E WRFL+A A S RC++ K
Sbjct: 849 RLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKASRAK 887
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 728 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 627
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 602 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 718
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,773,219
Number of Sequences: 37544
Number of extensions: 569001
Number of successful extensions: 1761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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