Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_I03
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +3

Query: 858 PPGGXPPPGXXP--XPPGGXGCPXPPXY 935
           PPG  PPP   P   PP     P PP Y
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 864 GGXPPPGXXPXPPG--GXGCPXPPXYP 938
           GG PPP   P PPG  G G P PP  P
Sbjct: 759 GGPPPP---PPPPGVAGAGPPPPPPPP 782


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 928 GGXGQPXPPGGXGXXPGGGXPPGG 857
           G  G    PGG G  PG G P GG
Sbjct: 72  GEEGLNGQPGGPGGGPGEGFPGGG 95


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 858  PPGGXPPPGXXPXPPGGXGCPXPPXYP 938
            PP   PPP   P  P G     PP  P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,369
Number of Sequences: 5004
Number of extensions: 20449
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)