Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_I01
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 175 5e-44
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 158 6e-39
02_04_0192 + 20795659-20796309 30 2.9
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 5.0
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 29 5.0
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484 28 8.8
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 175 bits (425), Expect = 5e-44
Identities = 92/201 (45%), Positives = 124/201 (61%), Gaps = 8/201 (3%)
Frame = +1
Query: 205 TKPYEGQKPGTSGLRKKVKVFVQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLVKE 381
T P++GQKPGTSGLRKKV VF Q +Y +NF+Q + + G+T+VV GDGRY K+
Sbjct: 11 TTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKD 70
Query: 382 VVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNPGGV 543
V I K++AANGV ++ VGQN ++STPAVS +IR+ K G +LTASHNPGG
Sbjct: 71 AVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGP 130
Query: 544 DEDFGIKFNCSNGXPASDATTDAIYKLTTSIKQYKIVPXL-NCAIDKIDVHTFQVXQRQF 720
EDFGIK+N NG PA ++ TD I+ TT+I +Y I L + I + V TF + F
Sbjct: 131 TEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGVTTFSGPEGPF 190
Query: 721 TVEVIXAXEXYVSYIXGXLXF 783
V+V + Y+ + F
Sbjct: 191 DVDVFDSTIDYIKLMKTIFDF 211
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 158 bits (383), Expect = 6e-39
Identities = 84/183 (45%), Positives = 111/183 (60%), Gaps = 1/183 (0%)
Frame = +1
Query: 253 KVKVFVQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSK 429
KVKVF QENY N+IQ + + + +G TLV+GGDGRY K+ I KI+A NGV K
Sbjct: 54 KVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGK 113
Query: 430 LIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGIKFNCSNGXPASDATTD 609
++VG+NG+LSTPAVS +IRK + GG +++ASHNPGG D D+GIKFN S+G PA + TD
Sbjct: 114 ILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSGQPAPETITD 173
Query: 610 AIYKLTTSIKQYKIVPXLNCAIDKIDVHTFQVXQRQFTVEVIXAXEXYVSYIXGXLXFPE 789
IY T SI + K + + + V V FTVEVI Y+ + F
Sbjct: 174 QIYGNTLSISEIKTADIPDVDLSSLGV----VSYGDFTVEVIDPVLDYLELMENVFDFQL 229
Query: 790 XQG 798
+G
Sbjct: 230 IKG 232
>02_04_0192 + 20795659-20796309
Length = 216
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -3
Query: 560 MPKSSSTPPGLWDAVRTIPPRVLYFLII*DTAGV--DSIPFCPT-INFETPFAALILIIL 390
MP SSS PP A P R ++ +AG S F T + +PF + +
Sbjct: 1 MPSSSSPPPPPPPATTATPRRRRRRRLLPSSAGGGGSSSSFSSTNSSSSSPFVSFLPPPT 60
Query: 389 STTSFTRYLPSPPTTSVDP 333
S + F R+LPSP S P
Sbjct: 61 SPSPFHRFLPSPLRASSVP 79
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 385 VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 486
+D+++K + GV L + NG+ ST A SY+ R
Sbjct: 105 IDRVMKKHSGIGVKALTIEFNGLFSTKARSYLER 138
>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 242 PLVPGFWPSYGLVSTVTLLDMILVIK*VSSKGHELFKRISRH 117
P++PGFW Y ++ T ++L + V H + K I H
Sbjct: 1049 PILPGFWAIYKVMGTGLFWALLLAVIVVGMIPHFVAKAIREH 1090
>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
Length = 355
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 421 VSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGVDEDFGI 561
V KL Q + S V I K + G+V+ H P DED G+
Sbjct: 157 VQKLSTKQPSLESRQMVLQEIAAEKGIAGVVVHVVHEPSSHDEDSGL 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,168,723
Number of Sequences: 37544
Number of extensions: 344975
Number of successful extensions: 821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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