Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_H21
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    29   1.2  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.8  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   5.0  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   6.6  

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 374 LDLKRYSFWGSCFQWALVMASIDDXRRP 457
           LDL  + F+G+ F W L +  I++ + P
Sbjct: 229 LDLFEFGFFGAAFSWMLDLVGIENFKSP 256


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 356 RYGNTKLDLKRYSFWGSCFQWALVMASIDDXRR 454
           R+ N     K   FW    +W LV++ I D  R
Sbjct: 8   RFWNHPAGPKTVHFWAPAMKWTLVLSGIGDYAR 40


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 235 NPTDP-SLSNSPVSAKLHTKMSRIYRVLVTSADKFVPSKLRPLWE 366
           N T P  +S+  V+   HT+ S I +VL T  D   P+K R L E
Sbjct: 39  NSTLPVGISSIRVTGAHHTRPSFIRKVLKTCLDTSKPAKSRSLLE 83


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 159 FFSSSRSFLQKPRPPKKPPHY 97
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,172
Number of Sequences: 5004
Number of extensions: 57715
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)