Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_H21
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 34 0.14
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 32 0.74
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 32 0.74
05_01_0137 + 917533-917814,918080-918352 31 1.7
03_02_0297 + 7196624-7196931,7198015-7198258,7198385-7198573,719... 30 2.3
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652... 30 3.0
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004 29 6.9
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144... 29 6.9
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 9.2
03_06_0126 + 31865339-31867943,31868176-31868660 28 9.2
03_04_0162 + 17858802-17861168 28 9.2
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 34.3 bits (75), Expect = 0.14
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 343 SKLRPLWEHEAGPKTIFFLGLLLSMGVSDGIHRRLXTPFXIKCLPPQPAYVSCN---WLR 513
SKL+ W H AGPKTI F G+S P + PQ V+C+ W R
Sbjct: 67 SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISY-PQQVVVACSGVIWAR 125
Query: 514 LG 519
G
Sbjct: 126 WG 127
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +2
Query: 332 NLSHRNSARYGNTKLDLKRYSFWGSCFQWALVMASIDDXRRPFX*SVYHPNPLTLAATGF 511
N++ + N K FW F+W + +A++ D +P + +P + +A +G
Sbjct: 63 NMAASKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKP-PEMISYPQQVVVACSGV 121
Query: 512 GW 517
W
Sbjct: 122 IW 123
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 31.9 bits (69), Expect = 0.74
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 395 FWGSCFQWALVMASIDDXRRPFX*SVYHPNPLTLAATGFGW 517
FW F+W + +A++ D +P + +P + +A TG W
Sbjct: 22 FWAPTFKWGISIANVADFAKP-PEKISYPQQVAVACTGVIW 61
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 31.9 bits (69), Expect = 0.74
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 395 FWGSCFQWALVMASIDDXRRPFX*SVYHPNPLTLAATGFGW 517
FW F+W + +A++ D +P + +P + +A TG W
Sbjct: 53 FWAPTFKWGISIANVADFAKP-PEKISYPQQVAVACTGVIW 92
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 747 PPPPLGXYRXFXTRXTPPPPXXXKFXXXGV 836
PPPP R F R TPPPP GV
Sbjct: 70 PPPPSFRRRSFCRRCTPPPPPPPAAGGGGV 99
>03_02_0297 +
7196624-7196931,7198015-7198258,7198385-7198573,
7198650-7198874
Length = 321
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 322 SADKFVPSKLRPLWEHEAGPKTIFFLGLLLSMGVSDGIHRRLXTPFXIKCLPPQPAYVSC 501
+AD FVP +R +WE + LGL ++GV + ++L T +PP V
Sbjct: 131 TADDFVPFDMRAVWE---AMEECHRLGLAKAIGVCNFSCKKLDTLLSFATIPPAVNQVEV 187
Query: 502 N 504
N
Sbjct: 188 N 188
>08_02_1409 -
26864544-26864658,26864787-26864916,26864953-26865283,
26866507-26866626,26867489-26867821,26867915-26868001,
26868093-26868320,26868434-26868565,26868649-26868861,
26869376-26869417,26869829-26869894,26870230-26870274,
26870367-26870429,26870757-26870827,26871149-26871249,
26871458-26871534,26872415-26872459
Length = 732
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 416 IESRSPKKNIVLGPASCSHSGRSFDGTNL-SADVTKTLY 303
+ S+SP++ +L P SC H G + + ++ S D+ ++Y
Sbjct: 383 LSSQSPEQCFLLSPKSCGHDGSASESSSFTSQDLEPSMY 421
>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
Length = 681
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Frame = -2
Query: 177 YQLTFWFFSSSRSFLQK-------PRPPKKP 106
+QLT W+F SS SF QK P PP P
Sbjct: 253 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 283
>08_01_0170 -
1440908-1441072,1441539-1441581,1442155-1442619,
1442714-1444149
Length = 702
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Frame = -2
Query: 177 YQLTFWFFSSSRSFLQK-------PRPPKKP 106
+QLT W+F SS SF QK P PP P
Sbjct: 256 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 286
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 741 ATPPPPLGXYRXFXTRXTPPPP 806
A PPPP + + R PPPP
Sbjct: 140 AYPPPPASSLQFYYARSRPPPP 161
>03_06_0126 + 31865339-31867943,31868176-31868660
Length = 1029
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 480 PTRLR*LQLASVGTRILPXLSXPINYALVGFANFPPGXXPNG 605
PT +Q+ S ++ P +++A+ GFA+ PP P+G
Sbjct: 958 PTMREVVQILSELPKLAPRQGEVLSHAVDGFASNPPAPVPSG 999
>03_04_0162 + 17858802-17861168
Length = 788
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 744 TPPPPLGXYRXFXTRXTPPP 803
TPPPP YR + PPP
Sbjct: 45 TPPPPADAYRTYIVLVDPPP 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,173,217
Number of Sequences: 37544
Number of extensions: 545086
Number of successful extensions: 1220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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