Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_H21
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   9.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 299 VYTEFWSHQQTNLSHRNSARYGNTKLDLKR 388
           +Y  F   +QT++SH N+    N   D KR
Sbjct: 857 MYKPFLIPEQTSISHENNQPTMNKCSDRKR 886


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 379 VQLRVPIAGGVSMGQICLLM*PKLCIYG 296
           +Q+RV +  G  +  I  L  P+ C++G
Sbjct: 515 LQIRVGVHSGAVVAGIVGLKMPRYCLFG 542


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 395 FWGSCFQW 418
           FWGS +QW
Sbjct: 168 FWGSAWQW 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,909
Number of Sequences: 438
Number of extensions: 5133
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)