Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_H15
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    30   1.9  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.6  

>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/57 (36%), Positives = 22/57 (38%)
 Frame = -1

Query: 547 GAFGKXFFRGYPRLXETISPXGGGXTXPPTXXPGPGXXXGERKGAQNPTPFPRGVXG 377
           GA G+    G P      SP G G   PP   PGP    G    AQ   P P G  G
Sbjct: 229 GAPGQDGQPGAPGTNTVNSPGGPGPAGPP-GPPGPPGQDGSGGAAQPGPPGPPGPPG 284


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 484 GGGXTXPPTXXPGPGXXXGERKGAQNPTPFPRGVXG 377
           G G   PP    GPG   G  +G     P PRG  G
Sbjct: 149 GPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPG 184


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 484 GGGXTXPPTXXPGPGXXXGERKGAQNPTPFPRGVXG 377
           G G   PP    GPG   G  +G     P PRG  G
Sbjct: 149 GPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPG 184


>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 303 VNXFIAAYNGYK*SNSITKFHKXSIFFTAF 214
           +N F ++  GYK    + K+   SIF+TAF
Sbjct: 36  INFFSSSLTGYKGFKKLCKYILFSIFYTAF 65


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +1

Query: 382 PPPGERGLGFGPLSVPPXXXXAPXXGLGXXXPLPQXGIWFPXIWGNP 522
           PPPG   +  GP   PP     P  G G   P P  G+  P I G P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITG-GPPPPPPPGGL--PPISGGP 758


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +1

Query: 382 PPPGERGLGFGPLSVPPXXXXAPXXGLGXXXPLPQXGIWFPXIWGNP 522
           PPPG   +  GP   PP     P  G G   P P  G+  P I G P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITG-GPPPPPPPGGL--PPISGGP 758


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +1

Query: 382 PPPGERGLGFGPLSVPPXXXXAPXXGLGXXXPLPQXGIWFPXIWGNP 522
           PPPG   +  GP   PP     P  G G   P P  G+  P I G P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITG-GPPPPPPPGGL--PPISGGP 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,447,071
Number of Sequences: 27780
Number of extensions: 170347
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)