Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_H11
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 213 4e-56
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 34 0.024
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 27 2.8
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.8
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.8
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 26 6.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 8.4
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni... 26 8.4
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 213 bits (519), Expect = 4e-56
Identities = 89/176 (50%), Positives = 128/176 (72%)
Frame = +3
Query: 123 MQHDDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGII 302
MQ D+V+W ++ CS+++ + Q FCRNEYN+TGLC+R SCPLANS+YAT+RE+NG +
Sbjct: 1 MQQDEVIWQVVGHEFCSYRIKGEAQNFCRNEYNVTGLCNRQSCPLANSRYATVREDNGKL 60
Query: 303 YLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLI 482
YLYMKT ER FP+K W+++KLS+N+ KA+ QI++ LLYWP +CKQR ++TQYL+
Sbjct: 61 YLYMKTIERAHFPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLL 120
Query: 483 RMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYND 650
+ R+L L+ L+PI+ K KAL+AA+++ IEK+L++RLK G Y D
Sbjct: 121 KARRLALKHQPALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLKSGVYGD 176
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 34.3 bits (75), Expect = 0.024
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 369 SRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQ 473
+RN EKAI QI+E LL W + + +Q F+ +T+
Sbjct: 398 ARNREKAIWQIHEKLLCWERALPIELRQYFIALTE 432
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 279 IREENGIIYLYMKTAERIMFP 341
IR+E+GII+L K A+ ++FP
Sbjct: 776 IRDEDGIIHLICKGADTVIFP 796
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 282 LLWHICCWQVDMKIYYIDRSSCTHSDKTAESL*LLYANSV 163
++W +CC I Y+ R C H D E++ L A +V
Sbjct: 128 IMWQLCC-----AIQYLHRQGCVHRDLKLENIFLDKAYNV 162
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 345 KQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKE 518
KQW K +E +H++ E + I C + + Q ++R R KL ++KE
Sbjct: 402 KQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLR-RVTKLFQLKE 458
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 148 AHTTSSCCILTISVNSQSVXEKNVWSSMNSNTCQNLK 38
A T SS + +VNS++ N SS+N NT NLK
Sbjct: 176 ASTNSSINNMVSTVNSENSNVNN-GSSLNGNTSSNLK 211
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 380 KVSGQFHFLPLFCWEHYSLSCLHIQINNAIFFSYCGIFAVGKWT*RST 237
K GQF L HY++S +Q N+ FFS I + R T
Sbjct: 262 KYQGQFVALKQTKLTHYAVSIYSVQFLNSTFFSNYSIITDAYFQTRET 309
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 146 PHNVIVLHFNY*CKFTISXREKCLVKYEF*HMSKS 42
P+N VL F+ K+ S E CL+ E+ H+ S
Sbjct: 1197 PYNKFVLLFSKWHKYLTSYFESCLLSTEYMHIYNS 1231
>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = -3
Query: 654 RCHCKCLFLISLTIVFLLHYLF-----WQQLKP 571
R H L+ +SLTI++ + YLF W L+P
Sbjct: 3 RIHKVILYYVSLTILYRVTYLFDLEEPWSTLRP 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,913
Number of Sequences: 5004
Number of extensions: 67063
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -