Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_H11
(902 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050528-1|AAH50528.1| 300|Homo sapiens RNA binding motif prote... 270 3e-72
BC039740-1|AAH39740.1| 300|Homo sapiens RNA binding motif prote... 270 3e-72
BC028230-1|AAH28230.1| 300|Homo sapiens RNA binding motif prote... 270 3e-72
AK027469-1|BAB55134.1| 300|Homo sapiens protein ( Homo sapiens ... 270 3e-72
AF251062-1|AAK34952.1| 300|Homo sapiens RNA binding protein pro... 270 3e-72
BC015965-1|AAH15965.1| 127|Homo sapiens Unknown (protein for IM... 185 2e-46
BC107596-1|AAI07597.1| 439|Homo sapiens LOC130940 protein protein. 31 4.3
AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein. 31 4.3
AC069146-2|AAX88933.1| 221|Homo sapiens unknown protein. 31 4.3
>BC050528-1|AAH50528.1| 300|Homo sapiens RNA binding motif protein
13 protein.
Length = 300
Score = 270 bits (663), Expect = 3e-72
Identities = 123/191 (64%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
Frame = +3
Query: 123 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 299
MQ DDV+W + NK CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G
Sbjct: 1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60
Query: 300 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 479
YLYMK ER FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120
Query: 480 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 659
IR+RKL L+R ++LVP+ +K+ KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180
Query: 660 FPQMAFDAALK 692
FP AFD AL+
Sbjct: 181 FPIHAFDKALE 191
>BC039740-1|AAH39740.1| 300|Homo sapiens RNA binding motif protein
13 protein.
Length = 300
Score = 270 bits (663), Expect = 3e-72
Identities = 123/191 (64%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
Frame = +3
Query: 123 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 299
MQ DDV+W + NK CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G
Sbjct: 1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60
Query: 300 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 479
YLYMK ER FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120
Query: 480 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 659
IR+RKL L+R ++LVP+ +K+ KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180
Query: 660 FPQMAFDAALK 692
FP AFD AL+
Sbjct: 181 FPIHAFDKALE 191
>BC028230-1|AAH28230.1| 300|Homo sapiens RNA binding motif protein
13 protein.
Length = 300
Score = 270 bits (663), Expect = 3e-72
Identities = 123/191 (64%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
Frame = +3
Query: 123 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 299
MQ DDV+W + NK CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G
Sbjct: 1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60
Query: 300 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 479
YLYMK ER FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120
Query: 480 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 659
IR+RKL L+R ++LVP+ +K+ KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180
Query: 660 FPQMAFDAALK 692
FP AFD AL+
Sbjct: 181 FPIHAFDKALE 191
>AK027469-1|BAB55134.1| 300|Homo sapiens protein ( Homo sapiens
cDNA FLJ14563 fis, clone NT2RM4000215, weakly similar to
MAK16 PROTEIN. ).
Length = 300
Score = 270 bits (663), Expect = 3e-72
Identities = 123/191 (64%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
Frame = +3
Query: 123 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 299
MQ DDV+W + NK CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G
Sbjct: 1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60
Query: 300 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 479
YLYMK ER FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120
Query: 480 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 659
IR+RKL L+R ++LVP+ +K+ KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180
Query: 660 FPQMAFDAALK 692
FP AFD AL+
Sbjct: 181 FPIHAFDKALE 191
>AF251062-1|AAK34952.1| 300|Homo sapiens RNA binding protein
protein.
Length = 300
Score = 270 bits (663), Expect = 3e-72
Identities = 123/191 (64%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
Frame = +3
Query: 123 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 299
MQ DDV+W + NK CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G
Sbjct: 1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60
Query: 300 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 479
YLYMK ER FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYL
Sbjct: 61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYL 120
Query: 480 IRMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYN 659
IR+RKL L+R ++LVP+ +K+ KAL+AA++DNAIEK+LLERLK+ TY DIYN
Sbjct: 121 IRIRKLTLKRQRKLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYN 180
Query: 660 FPQMAFDAALK 692
FP AFD AL+
Sbjct: 181 FPIHAFDKALE 191
>BC015965-1|AAH15965.1| 127|Homo sapiens Unknown (protein for
IMAGE:4045270) protein.
Length = 127
Score = 185 bits (450), Expect = 2e-46
Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Frame = +3
Query: 123 MQHDDVVWAII-NKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGI 299
MQ DDV+W + NK CS K+ TKTQ FCRNEY+LTGLC+RSSCPLANS+YATI+EE G
Sbjct: 1 MQSDDVIWDTLGNKQFCSFKIRTKTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQ 60
Query: 300 IYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 479
YLYMK ER FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQ
Sbjct: 61 CYLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQKK 120
Query: 480 IRMRKLK 500
+ +K K
Sbjct: 121 KKKKKKK 127
>BC107596-1|AAI07597.1| 439|Homo sapiens LOC130940 protein protein.
Length = 439
Score = 31.5 bits (68), Expect = 4.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 691 KQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRL 822
K+K L +A K+K+K W +K Q W+ R L +L L +L
Sbjct: 252 KKKELLQRAEKKKKIKKYWAKK-KQKWQEMEMRDLQRLEELKKL 294
>AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 31.5 bits (68), Expect = 4.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 691 KQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRL 822
K+K L +A K+K+K W +K Q W+ R L +L L +L
Sbjct: 404 KKKELLQRAEKKKKIKKYWAKK-KQKWQEMEMRDLQRLEELKKL 446
>AC069146-2|AAX88933.1| 221|Homo sapiens unknown protein.
Length = 221
Score = 31.5 bits (68), Expect = 4.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 691 KQKRYLMKANLKRKMKMKWREKLNQSWKGNWRRQLNKLMSLLRL 822
K+K L +A K+K+K W +K Q W+ R L +L L +L
Sbjct: 34 KKKELLQRAEKKKKIKKYWAKK-KQKWQEMEMRDLQRLEELKKL 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,349,365
Number of Sequences: 237096
Number of extensions: 2239830
Number of successful extensions: 9250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9239
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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