Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_H08
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 219 3e-57
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 204 1e-52
01_02_0013 + 10162478-10163581 29 3.9
01_01_1134 + 8994315-8995892 29 6.7
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 8.9
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 8.9
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 8.9
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 219 bits (534), Expect = 3e-57
Identities = 106/170 (62%), Positives = 129/170 (75%), Gaps = 8/170 (4%)
Frame = +2
Query: 215 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 394
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 395 TPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 550
PF+QWY +HY + +GRKK A+ E E A K+S RK RQ+ +
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTL 167
Query: 551 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 700
+ +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 168 DSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 201
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 204 bits (497), Expect = 1e-52
Identities = 106/187 (56%), Positives = 129/187 (68%), Gaps = 25/187 (13%)
Frame = +2
Query: 215 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 394
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 395 TPFRQWYESHYTLPLGRKKGA-------------------------KLTEAEEAIINKKR 499
PF+QWY +HY + +GRKK A K +AE K+
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKK 167
Query: 500 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRK 679
S RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K
Sbjct: 168 SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKK 227
Query: 680 IKSKRAK 700
++ K+ K
Sbjct: 228 LQRKKGK 234
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 201
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 228 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 365
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 263 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 406
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 257 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 403
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 572 FHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 700
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 224 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 385
GG T R +R + C +++ ++V++ + NELV T +N I+V
Sbjct: 383 GGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,548,009
Number of Sequences: 37544
Number of extensions: 391963
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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