Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_H08
(908 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 278 2e-74
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 278 2e-74
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 278 2e-74
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 278 2e-74
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 230 5e-60
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 120 7e-27
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 7.6
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 7.6
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 7.6
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 7.6
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 2e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +2
Query: 122 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 298
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 299 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 478
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 479 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 658
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 659 LEFYLRKIKSKRAK 700
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 85.8 bits (203), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 210
MGISRD WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 2e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +2
Query: 122 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 298
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 299 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 478
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 479 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 658
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 659 LEFYLRKIKSKRAK 700
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 85.8 bits (203), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 210
MGISRD WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 2e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +2
Query: 122 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 298
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 299 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 478
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 479 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 658
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 659 LEFYLRKIKSKRAK 700
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 85.8 bits (203), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 210
MGISRD WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 278 bits (681), Expect = 2e-74
Identities = 133/194 (68%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Frame = +2
Query: 122 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 298
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 299 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 478
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 479 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 658
I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 659 LEFYLRKIKSKRAK 700
LEFYLRKIK+++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 85.8 bits (203), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 210
MGISRD WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 230 bits (563), Expect = 5e-60
Identities = 111/157 (70%), Positives = 128/157 (81%)
Frame = +2
Query: 230 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 409
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQ
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQ 91
Query: 410 WYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 589
WYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+L
Sbjct: 92 WYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKL 151
Query: 590 LACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 700
LAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 152 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
Score = 85.8 bits (203), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 76 MGISRDXWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 210
MGISRD WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 120 bits (289), Expect = 7e-27
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +2
Query: 461 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 640
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 641 ILEGKELEFYLRKIKSKRAK 700
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,702,830
Number of Sequences: 237096
Number of extensions: 2223071
Number of successful extensions: 4620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4620
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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