Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_H06
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          171   5e-43
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   161   9e-40
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289          106   3e-23
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    42   5e-04
11_01_0526 - 4140853-4141017,4141416-4141619                           28   8.7  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  171 bits (417), Expect = 5e-43
 Identities = 78/98 (79%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
 Frame = +1

Query: 211 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 387
           VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  
Sbjct: 33  VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTAR 92

Query: 388 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 501
           LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 93  LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 23/29 (79%), Positives = 29/29 (100%)
 Frame = +3

Query: 114 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 200
           MVR++VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRP 29


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  161 bits (390), Expect = 9e-40
 Identities = 75/94 (79%), Positives = 82/94 (87%), Gaps = 1/94 (1%)
 Frame = +1

Query: 211 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 387
           VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  
Sbjct: 33  VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTAR 92

Query: 388 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 489
           LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 93  LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/29 (75%), Positives = 29/29 (100%)
 Frame = +3

Query: 114 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 200
           MVR++VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRP 29


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score =  106 bits (254), Expect = 3e-23
 Identities = 45/97 (46%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
 Frame = +1

Query: 211 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERW-TN 387
           V+V FL +M   GYI +FE++D HR GKI V L GR+  C  ++ R D+   +IE++   
Sbjct: 32  VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYRQDIRAKEIEQYRVR 91

Query: 388 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 498
           +LP+RQ+GY+V+TT  G++DHEEA ++++GG++LG+F
Sbjct: 92  MLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128



 Score = 31.5 bits (68), Expect = 0.94
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = +3

Query: 129 VLSDALKSIHNAEKRGKRQVLIRP 200
           +L+DAL+++ NAE+RGK   L++P
Sbjct: 5   ILNDALRTMVNAERRGKATALLQP 28


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 271  VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 372
            VDDH++G+I++   GRLNK GVIS R DV +  +
Sbjct: 912  VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945


>11_01_0526 - 4140853-4141017,4141416-4141619
          Length = 122

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 289 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 384
           G++   +   LNKCGVI+P     I+D+   T
Sbjct: 78  GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,157,196
Number of Sequences: 37544
Number of extensions: 272233
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)