Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_H03
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    95   1e-20
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   6.4  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   8.4  
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc...    26   8.4  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 46/116 (39%), Positives = 69/116 (59%)
 Frame = +1

Query: 355 LKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRVMPNTPALVKEGAAAFSRGTK 534
           L   K   + K KL +S+  G TI++++S L    RVIR+MPNT + ++E  +    G  
Sbjct: 94  LNSPKMKEALKGKLILSILAGKTISSLQSMLDESTRVIRIMPNTASRIRESMSVICPGPN 153

Query: 535 ATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSGPAYVYMLIESLADGGVRCG 702
           AT ED +    +F  +G   ++PE  +DA TA+ GSGPA+V  +IE++ DGGV  G
Sbjct: 154 ATEEDIKFAEWVFNGIGRSMKLPEKLIDAATAVCGSGPAFVATMIEAMTDGGVMMG 209



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 771 GDHPAMLKDNVTSPAGSTAEGTYHLEXKRV 860
           G HPAM++++V++PAG T  G   LE  ++
Sbjct: 233 GQHPAMIRNDVSTPAGCTISGLLALEDGKI 262


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 520 SRGTKATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSGSG 645
           +R  K T E   L++ L    G C E  E  ++A T +SG G
Sbjct: 264 ARACKDTLEKYALSAILSNTRGVCTEAFENVVEANTLMSGLG 305


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 309 RPLHHGYIFE*RCSSQAL-KSFGAGNIGRMTASCNFVGFCQTR 184
           RPL  G I +     +AL  + G+G I   T SC  V F QTR
Sbjct: 186 RPL--GLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTR 226


>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
           Dad5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 356 LKR*KTCPRQRISSSFPLPWELLSLQSNRI 445
           ++R    P  R SSS P P ++ S Q NR+
Sbjct: 1   MRRSTIVPTSRTSSSSPSPSQMKSFQMNRL 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,798
Number of Sequences: 5004
Number of extensions: 71396
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)