Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_H03
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118... 83 2e-16
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 31 0.95
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495... 31 1.7
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 29 3.8
10_08_0905 - 21469688-21469933,21470175-21470499,21470586-214708... 29 5.1
03_04_0148 - 17708737-17709027,17709270-17709518,17709713-177098... 29 6.7
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 28 8.8
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599... 28 8.8
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 28 8.8
>01_07_0174 -
41711220-41711408,41711483-41711669,41711690-41711810,
41712194-41712266,41712494-41712585,41712900-41712948,
41713189-41713413
Length = 311
Score = 83.4 bits (197), Expect = 2e-16
Identities = 83/291 (28%), Positives = 112/291 (38%), Gaps = 28/291 (9%)
Frame = +1
Query: 115 EAMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPSDVASAKAFQGLGATALFENXX 294
E ++GFIG G LA ++A G ++G+ I + H A+AF +GA L N
Sbjct: 17 EVFRLGFIGPGNLAESIARGVAASGVLPATAIRTAPHRRP-ERAEAFSSIGAHILETNAQ 75
Query: 295 XXXXXXXXXXXXXXXXXXPALKEIKNLPSAKNKLFISVAMGITIATVESNLPSEARVIRV 474
L E+K L S + KL +S+A GI + ++ R IRV
Sbjct: 76 VVDDSDVIVISVKPQIVRQVLVELKPLLS-EEKLLVSIAAGIKMEDLQG-WSGHRRFIRV 133
Query: 475 MPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDEVPEYQMDAITALSG----- 639
MPNTP+ V + A+ G AT D LF A+G E DA+T L
Sbjct: 134 MPNTPSAVGQAASVMCLGEMATENDENRVRSLFSAIGKVWTAEEKYFDAVTGLRSFLEKL 193
Query: 640 --------------------SGPAYVY--MLIESLADGGVRCGXXXXXXXXXXXXXXXGS 753
SG Y + IE++ADGGV G G+
Sbjct: 194 HWKQYVMILRINMYSHLFEYSGSGPAYIFLAIEAMADGGVAAGLPRDLALGLASQTVLGA 253
Query: 754 AAMVKLVIIQP-C*KTMSPVPQGLPLREHITWXKNGFRSAIIGAVSAAVNK 903
A MV P K M P G + K FR +I AV AA +
Sbjct: 254 ATMVNKTGKHPGQLKDMVTSPAGTTITGIQELEKGAFRGTLINAVVAATKR 304
>08_02_0881 -
22216657-22216780,22216918-22217056,22217120-22217192,
22218260-22218357,22218516-22218542,22218625-22218715,
22218819-22218900,22219983-22220098
Length = 249
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 468 NHASLRRQIRFDCSDSNSHGNGNEELILCRGQVFYLFKSGYHDIRLDRYYHHFRPLHHGY 289
+H ++ R S +HG G + + RG ++ +F+ HD++ + HH P Y
Sbjct: 82 DHENIIRLKEIVVSPGTAHGAGGSDDYMYRGDIYMVFEYMDHDLK--KVLHHSTPSQVKY 139
Query: 288 IFE 280
E
Sbjct: 140 YME 142
>09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,
4954991-4955167,4955705-4955761,4955988-4956174,
4956910-4957055,4957213-4957395,4957860-4957970,
4959386-4959505,4959596-4959740,4960001-4960164,
4960816-4960902,4961062-4961390,4963426-4963507,
4963616-4963746,4963976-4964225,4965112-4965393,
4966780-4966986
Length = 1087
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/85 (30%), Positives = 36/85 (42%)
Frame = -2
Query: 627 GYSVHLVLWYLVAGTHRFEEL*RQLCVFRCGFSTATKGSCAFFH*RRSVWHYTNHASLRR 448
G V L YLVAG + F L +R ++ A G F R T H + RR
Sbjct: 969 GRDVGLSFLYLVAGYYSFVSS-MALAPYRALYALAIIGFICFAS-RIIETRSTRHRAHRR 1026
Query: 447 QIRFDCSDSNSHGNGNEELILCRGQ 373
Q R CS + G +++C G+
Sbjct: 1027 QGRAGCSTAAGDGPEAGTVMVCTGE 1051
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 496 VKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCD--EVPEYQMDAITALSGSGPAYVYMLI 669
+K GAA GT + ++ + + ++ VG D EV + G GP V ML+
Sbjct: 222 IKPGAAVIDVGTNSISDPTRKSG--YRLVGDVDFAEVSKVAGHLTPVPGGVGPMTVAMLL 279
Query: 670 ESLADGGVR 696
++ DG R
Sbjct: 280 KNTVDGAKR 288
>10_08_0905 -
21469688-21469933,21470175-21470499,21470586-21470833,
21471061-21471315
Length = 357
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 448 PSEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDE 597
PS++R +R P +PA ++ A+S TK+ A L + KAVG E
Sbjct: 151 PSDSRDLRFWPTSPASFRQSIDAYSSETKSLA--LCLFEFMAKAVGAKPE 198
>03_04_0148 -
17708737-17709027,17709270-17709518,17709713-17709851,
17710050-17710268,17710360-17710735,17711741-17711909
Length = 480
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 22 MHREPLKXXIQWSNAVEFARDVLYVRKLP 108
+HRE +K +W + +E R++ Y R P
Sbjct: 172 LHREEVKEICEWYHGLESPRELFYARHRP 200
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 448 PSEARVIRVMPNTPALVKEGAAAFSRGTKATAEDAQLTSQLFKAVGTCDE 597
PS++R +R P +PA + A+S TK+ A L + KAVG E
Sbjct: 149 PSDSRDLRFWPTSPASFRRSLDAYSSETKSLA--LCLFEFMAKAVGAKPE 196
>08_01_0683 +
5991905-5992055,5993262-5993451,5993701-5993772,
5994016-5994084,5994189-5994260,5994440-5994511,
5994623-5994694,5994777-5994848,5995276-5995347,
5995452-5995526,5995929-5996005,5996417-5996781,
5996872-5997070,5997151-5997309,5997391-5997509,
5997624-5997641,5997701-5997851,5997959-5998190,
5998272-5998422,5998517-5998876
Length = 915
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 444 IRFDCSDSNSHGNGNEELILC 382
+R CS S+S G+G +LILC
Sbjct: 2 MRIRCSSSSSGGHGGHQLILC 22
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 472 VMPNTPALVKEGAAAFSRGTKATAEDAQLTSQL-FKAVGTCDEVPEYQMDAITALSGSGP 648
V P + A V +++ R A+A + ++ + + D PE + A + + GS P
Sbjct: 70 VDPPSYADVAASSSSSPRSASASASASPRSAASDYALIAVSDPTPEAEPAATSLVPGSAP 129
Query: 649 AYVYMLIESLADGGVR 696
Y+ L+ S G R
Sbjct: 130 TYISYLVTSARRGDHR 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,014,862
Number of Sequences: 37544
Number of extensions: 558907
Number of successful extensions: 1333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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