Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_H03
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.41 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.41 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.54 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   8.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 258 LKSFGAGNIGRMTASCNFVGFCQTRRNKAIRQSKRKPAAAYKSDLHCF 115
           L S+G   +    A      F   RR   ++  + K    YKS LHC+
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCW 260


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 258 LKSFGAGNIGRMTASCNFVGFCQTRRNKAIRQSKRKPAAAYKSDLHCF 115
           L S+G   +    A      F   RR   ++  + K    YKS LHC+
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCW 260


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 66  CGVCA*RTLRXKITINRSNEDRIYRRRQACVC 161
           C VC  +TL  K+T+ R  E + ++   + VC
Sbjct: 374 CDVCG-KTLSTKLTLKRHKEQQHFQPLNSAVC 404


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 156 VCFGEWLYF 182
           VC+G W+YF
Sbjct: 218 VCYGIWVYF 226


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 156 VCFGEWLYF 182
           VC+G W+YF
Sbjct: 94  VCYGIWVYF 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,062
Number of Sequences: 438
Number of extensions: 5268
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)