Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G23
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.006
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.079
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   6.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/58 (34%), Positives = 20/58 (34%)
 Frame = +1

Query: 541 KXPPPPPXGXXXFFXXPPPPPPPXKXXXXXXXXGGGXXGXPPPGGGGXXXXPPXXGXP 714
           K PPPPP         P P P P          GG     PPPG  G    PP    P
Sbjct: 730 KSPPPPPPAVIV----PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 34.3 bits (75), Expect = 0.026
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 305 PPPXGGGXXPPPPXXXXXGGXPPPP 379
           P P  GG  PPPP     G  PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +2

Query: 305 PPPX---GGGXXPPPPXXXXXGGXPPPP 379
           PPP    GG   PPPP      G PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 310 PXGGGXXPPPPXKXXXGGXXPPPP 381
           P  GG  PPPP     G   PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -3

Query: 707 PXXGGXXXXPPPPG--GGXPXXPPP 639
           P  GG    PPPPG  G  P  PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 307 PPXGGGXXPPPPXKXXXGGXXPPPP 381
           P  GG   PPPP      G  PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 388 PXLGGGGXPPPXXXXXGGGXXPPP 317
           P +GG   PPP     G G  PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 302 GPPPXGGGXXPPPPXXXXXGGXPPPP 379
           GPPP      PPPP     G  PPPP
Sbjct: 760 GPPPP-----PPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 852 GXAPPPPXKKXXXXXPPXXPPP 917
           G  PPPP        PP  PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 306 PPPXGGGXXPPPXXXXXGGGXPPPPKXG 389
           P P       PP     GG  PPPP  G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 547 PPPPPXGXXXFFXXPPPPPP 606
           PPPPP G       PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 549 PPPPXGXGXFFFXXPPPPPP 608
           PPPP   G      PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 311 PXGGGXXPPPPXXXXXGGXPPPP 379
           P G    PPPP        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 698 GGXXXXPPPPGGGXPXXPPP 639
           G     PPPPG   P  PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 308 PPXGGGXXPPPPXXXXXGGXPPPP 379
           PP      PPPP        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
 Frame = +2

Query: 290 RXGXGPPPXGGGXX-------PPPPXXXXXGGXPPPPQXXXEXP 400
           R   G PP G G         PPPP     G  P PPQ     P
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +1

Query: 589 PPPPPPPXKXXXXXXXXGGG--XXGXPPP 669
           PPPPPPP +        G G      PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 555 PPXGXGXFFFXXPPPPPPXK 614
           PP G G      PPPPPP +
Sbjct: 325 PPIGNGSSNSSLPPPPPPPR 344



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 307 PPXGGGXXPPPPXKXXXGGXXPPPP 381
           PP G    PPPP +        PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 550 PPPPXGXXXFFXXPPPPPPPXKXXXXXXXXGGGXXGXPPP 669
           PP   G       PPPPPP             G    PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +3

Query: 288 NGAGXXP-PPXG-GGXXPPPXXXXXGGGXPPPP 380
           N AG  P PP G     PPP       G  PPP
Sbjct: 346 NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 861  PPPPXKKXXXXXPPXXPPPXXP 926
            PPPP        PP  PPP  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
 Frame = -2

Query: 717 GGXPPGXGGXXXXPPPX-GGXXXXXPPXXXXXXXXFXGG-GGGGGXXKKXXXXXGGGGGX 544
           GG   G GG    PPP  GG                 GG GGG G  +      GGG G 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 543 F 541
           F
Sbjct: 247 F 247


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPP 224



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPP 237



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 230 GEHMPPPPMHHEPGEHMPPPP 250



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 243 GEHMPPPPMHHEPGEHMPPPP 263



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 256 GEHMPPPPMHHEPGEHMPPPP 276



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPP 289



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 282 GEHMPPPPMHHEPGEHMPPPP 302



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 295 GEHMPPPPMHHEPGEHMPPPP 315



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 308 GEHMPPPPMHHEPGEHMPPPP 328



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 319 GGXXPPPPXKXXXGGXXPPPP 381
           G   PPPP     G   PPPP
Sbjct: 321 GEHMPPPPMHHEPGEHMPPPP 341


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 565 GXXXFFXXPPPPPPP 609
           G    F  PPPPPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.159    0.590 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,440
Number of Sequences: 5004
Number of extensions: 36252
Number of successful extensions: 306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)