Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G22
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    30   0.44 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.58 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.4  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 988 GGAXAGGAXGXXGGXPGGSXGG 923
           GGA  G   G  GG PGG+ GG
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGG 633



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 988 GGAXAGGAXGXXGGXPGGSXGG 923
           GGA  G   G  GG PGG+  G
Sbjct: 616 GGAPGGMPGGAPGGAPGGADNG 637


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 988 GGAXAGGAXGXXGGXPGGSXGGXAXXXGP 902
           G    GG  G  GG PGG  GG     GP
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 985 GAXAGGAXGXXGGXPGGSXGGXAXXXG 905
           G   GG  G  GG  GG+ GG     G
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGG 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,508
Number of Sequences: 5004
Number of extensions: 17383
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)