Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G19
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.6  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   9.8  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 95  PYCCFSSPQSWCV*TQKYTGLLIMKKNTPSEAYFQSDTPXDVTWDT 232
           P+   ++PQ       ++ G+L    +T +   FQ D   D  +DT
Sbjct: 350 PHKLLTAPQQCSTLLLRHEGVLAEAHSTNAAYLFQKDKFYDTKYDT 395


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 692 IYTEANSSFFGERQTNIIL*MMGLC 618
           +Y  A+  F G  QTN+++   G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHNGSC 116


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 692 IYTEANSSFFGERQTNIIL*MMGLC 618
           +Y  A+  F G  QTN+++   G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHNGSC 116


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 692 IYTEANSSFFGERQTNIIL*MMGLC 618
           +Y  A+  F G  QTN+++   G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHGGSC 116


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 692 IYTEANSSFFGERQTNIIL*MMGLC 618
           +Y  A+  F G  QTN+++   G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHGGSC 116


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 692 IYTEANSSFFGERQTNIIL*MMGLC 618
           +Y  A+  F G  QTN+++   G C
Sbjct: 92  MYNSADEGFDGTFQTNVVVKHGGSC 116


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 589 QRSGMS--GDCQHNPIIHRIMFVCLSPKKL 672
           Q SG S   +CQ  P+IH + +    PK +
Sbjct: 31  QVSGASTTDECQVTPVIHVLQYPGCVPKPI 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,988
Number of Sequences: 336
Number of extensions: 4976
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)