Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G18
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.43 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   2.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   9.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 177 QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 347
           ++ E+++ ++IL G YD+ +R S E  + G   +  N+    I      TMEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 177 QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 347
           ++ E+++ ++IL G YD+ +R S E  + G   +  N+    I       MEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 517 TSILNSSVGSSLPWWENNRVYFKIHNTKYNQYLKM 621
           +S+ N ++ ++  +  NN   +  +N  YN Y K+
Sbjct: 83  SSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKL 117


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 206 AVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKY 99
           A V+  ++V++  + G  NDA   G      YN  Y
Sbjct: 107 AGVRIYVDVIMNHMSGDRNDAHGTGNSRANTYNFDY 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,947
Number of Sequences: 438
Number of extensions: 5119
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)