Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G15
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.52
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 28 2.1
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 28 2.1
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 27 3.7
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 27 4.9
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 27 4.9
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.9
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 26 6.5
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 26 8.5
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 26 8.5
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 668 RSLRGLXPGTSRRSAKTAS---EE*PEPLLFFTNCWKPSSVHLG*FSTVQHRAVDTAGHP 838
+ L+G+ G ++ + EE PE +L C ++ +T+Q A+ T G
Sbjct: 28 KKLQGITKGKAKVTGNNPVDPIEEFPEGIL----CENLKKQNITECTTIQRYAIPTIGSK 83
Query: 839 RGALLCIPEAAGNTI 883
R L C P +G TI
Sbjct: 84 RDLLACAPTGSGKTI 98
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 485 HHVHIRTDRRLHLWHCC*QVRKEKCSSLLLYSDCCRLDDKVNIGTSNCPDRGPG-VHWLR 661
H I++ L LWH KEKC +LL + C + N + P VH+++
Sbjct: 47 HEELIQSINLLDLWHQLIPGTKEKCLTLLSRAPCMNIRAFTNNVMKRFQVKFPSDVHYMK 106
Query: 662 CWRSLRGLXPGTSRRSAKTASEE 730
L G + AK++SE+
Sbjct: 107 AKVEFEKL--GLVFKDAKSSSEK 127
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -2
Query: 216 IINKREIHKKARVIFFYKSAKVKKKVSNFEIVNRSKYETALPASTRVM 73
++N IH + R+ +K K + F+I+N KY + +V+
Sbjct: 432 VLNNYGIHNEERLSIVFKPLGASPKDTFFDIINNQKYVVNTDGTLKVV 479
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 741 LCCFSQTAGNLLVFILGDFLPFNTVLWILLAIPVVHF 851
LC S AG F+L N + WI +A+ + F
Sbjct: 372 LCLMSSQAGKTWGFLLNVIAVSNQISWIFIAVSSLRF 408
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 861 LKLPETPSYLIKCGKNE 911
L LPE+P YLI+ GK+E
Sbjct: 201 LFLPESPRYLIQVGKDE 217
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +3
Query: 288 YNVGSENEEKYGSKHFQVLMAIIVCLPVFSY-GTAMGWISPHKALLMGEDTPSNAPVTET 464
+++ + E KHF + V L Y ++G + L E+T N + +
Sbjct: 61 FDIEGGSRETSQWKHFLNVAVAGVALMSDGYCSNSIGTVITILRKLYPEETTHNKSLQD- 119
Query: 465 EVSWMASIMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAV 590
+ I ++ + +G +D+FGRKN ++ +I + V
Sbjct: 120 ----IGMIAYVGTIVGQLSFGWYSDRFGRKNGMITATIILIV 157
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 462 TEVSWMASIMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAVG 593
++VSW A+ I ++G D +GRK LL +G
Sbjct: 124 SQVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIG 167
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 240 NTDDITAQIINKREIHK 190
NTD+ TA++I K E HK
Sbjct: 168 NTDEATAKVIKKYEAHK 184
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +2
Query: 380 WYRHGLDLPSQSASHGRRHTIERPRHGDGSILDGVHHVHIRTDRRLHLWHCC 535
W R+ LD PS R+ ++ P+H D + + ++ LW C
Sbjct: 151 WDRYDLDQPSNQDVEESRNLVQEPKHRSKK-YDRLGLDELVMEQTASLWKIC 201
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 840 VVHFCVFLKLPETPSYLIKCGKNE 911
++ F LPE+P YLI GK+E
Sbjct: 190 IIMFIGISFLPESPRYLIAIGKDE 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,773,844
Number of Sequences: 5004
Number of extensions: 80750
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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