Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G15
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 44 1e-04
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 43 3e-04
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001... 42 9e-04
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184... 35 0.10
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 30 2.9
03_02_0378 - 7915514-7915900 29 3.9
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 29 6.8
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 28 9.0
08_02_0742 - 20630313-20630798 28 9.0
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 28 9.0
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 44.4 bits (100), Expect = 1e-04
Identities = 40/185 (21%), Positives = 70/185 (37%)
Frame = +3
Query: 342 LMAIIVCLPVFSYGTAMGWISPHKALLMGEDTPSNAPVTETEVSWMASIMFIFAPIAVFI 521
L +IV L +G G+ SP + ++ + +T +E S S+ + A +
Sbjct: 64 LCTLIVALGPIQFGFTGGFSSPTQDAIIRD-----LDLTLSEFSVFGSLSNVGAMVGAIA 118
Query: 522 YGIAADKFGRKNALLCCSIPIAVGWMIKLISAHPXXXXXXXXXXXXXXXXXXVVXPLVXX 701
G A+ GRK +L+ +IP +GW+ + P+
Sbjct: 119 SGQMAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGVISYTVPVYIA 178
Query: 702 XXXXXXXXXXXXXLCCFSQTAGNLLVFILGDFLPFNTVLWILLAIPVVHFCVFLKLPETP 881
+ S T G LL ++LG F+P+ + I + V +PE+P
Sbjct: 179 EISPQNMRGALGSVNQLSVTVGILLAYLLGMFVPWRLLAVIGILPCTVLIPGLFFIPESP 238
Query: 882 SYLIK 896
+L K
Sbjct: 239 RWLAK 243
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 43.2 bits (97), Expect = 3e-04
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 1/186 (0%)
Frame = +3
Query: 342 LMAIIVCLPVFSYGTAMGWISPHKALLMGEDTPSNAPVTETEVSWMASIMFIFAPIAVFI 521
L +IV L +G G+ SP + ++ + ++ +E S S+ + A +
Sbjct: 65 LCTLIVALGPIQFGFTSGFSSPTQDAIIRD-----LKLSISEFSAFGSLSNVGAMVGAIA 119
Query: 522 YGIAADKFGRKNALLCCSIPIAVGWMIKLISAHPXXXXXXXXXXXXXXXXXXVVXPLVXX 701
G A+ GRK +L+ ++P +GW+ + P+
Sbjct: 120 SGQMAEYIGRKGSLIIAAVPNIIGWLAISFAKDASFLYMGRLLEGFGVGVISYTVPVYIA 179
Query: 702 XXXXXXXXXXXXXLCCFSQTAGNLLVFILGDFLPFNTVLWILLAIPVVHFCVFL-KLPET 878
+ S T G LL ++LG F+P+ +L ++ +IP L +PE+
Sbjct: 180 EISHQNTRGALGSVNQLSVTIGILLAYLLGMFVPWR-LLAVIGSIPCTLLIPGLFFIPES 238
Query: 879 PSYLIK 896
P +L K
Sbjct: 239 PRWLAK 244
>05_07_0239 -
28599452-28599564,28599685-28599799,28600051-28600116,
28600270-28600329,28600571-28600617,28601118-28601202,
28601554-28601646,28601727-28601791,28601942-28602017,
28602110-28602175,28603082-28603141,28603400-28603489,
28603594-28603893
Length = 411
Score = 41.5 bits (93), Expect = 9e-04
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 339 VLMAIIVCLPVFSYGTAMGWISPHKALLMGEDTPSNAPVTETEVSWMASIMFIFAPIAVF 518
VL +IV L +G G+ SP + ++ S+ +T +E S S+ + A +
Sbjct: 63 VLCTLIVALGPIQFGFTCGFSSPTQDAII-----SDLGLTLSEFSLFGSLSNVGAMVGAI 117
Query: 519 IYGIAADKFGRKNALLCCSIPIAVGWM 599
G A+ GRK +L+ +IP +GW+
Sbjct: 118 ASGQIAEYIGRKGSLMIAAIPNIIGWL 144
Score = 33.1 bits (72), Expect = 0.31
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 753 SQTAGNLLVFILGDFLPFN--TVLWILLAIPVVHFCVFLKLPETPSYLIKCGKNE 911
S T G LL ++LG F+P+ +VL IL ++ F +PE+P +L K GK E
Sbjct: 174 SVTIGILLAYLLGMFVPWRILSVLGILPCSILIPGLFF--IPESPRWLAKMGKME 226
>01_01_0216 +
1843413-1843509,1844583-1844694,1844841-1844908,
1845165-1845297,1845404-1845503,1845562-1845722,
1846095-1846188,1846273-1846426,1846597-1846743,
1846819-1846892,1846985-1847073,1847161-1847275,
1847569-1847751
Length = 508
Score = 34.7 bits (76), Expect = 0.10
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +3
Query: 354 IVCLPVFSYGTAMGWISPHKALLMGEDTPSNAPVTETEVSWMASIMFIFAPIAVFIYGIA 533
+ CL +G +G ++ L + S V + W+ S A F G
Sbjct: 57 VACLGAILFGYHLGVVNGALEYLAKDLGISENAVLQ---GWVVSTTLAGATAGSFTGGAL 113
Query: 534 ADKFGRKNALLCCSIPIAVG 593
ADKFGR + +IP+AVG
Sbjct: 114 ADKFGRTRTFILDAIPLAVG 133
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 388 PWAGSPLTKRFSWAKTHHRTPPSRRRKY 471
PW G P+T ++ WA+T H + R Y
Sbjct: 850 PWDGCPMTFKWLWAQTEHIRVHTGERPY 877
>03_02_0378 - 7915514-7915900
Length = 128
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 688 GQTTKAPPAPKPMNARAP 635
GQTT APP P P N + P
Sbjct: 25 GQTTNAPPPPPPPNTQCP 42
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +3
Query: 423 MGEDTPSNAPVTETEVSWMASIMFIFAPIAVFIYGIAADKFGRKNALL 566
+G+ + ++ S + S++F+ + + +GI +D +GR+ A++
Sbjct: 71 VGQSVQAEWELSAQAESLITSVVFVGMLVGAYSWGIVSDNYGRRQAVM 118
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -1
Query: 676 KAPPAPKPMNARAPIRAIGCADINFIIQPTAIGIEQQRRAFFLPNL 539
KAP +P + +RAPI + D+++ + T + + ++ +F + L
Sbjct: 246 KAPSSPATVTSRAPIDLVTVLDVSWSMAGTKLALLKRAMSFVIQAL 291
>08_02_0742 - 20630313-20630798
Length = 161
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 413 SASHGRRHTIERPRHGDGSILDGVHHVHIRTDRR 514
S+SHG R R G G DGV V T +R
Sbjct: 63 SSSHGEEEAARRRRRGRGEEADGVDPVRAVTTKR 96
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 480 ASIMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAV 590
AS MF A +V I+GI ADK+GRK ++ I I +
Sbjct: 143 ASYMFGRALSSV-IWGIVADKYGRKPIIIITLISIII 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,232,780
Number of Sequences: 37544
Number of extensions: 567844
Number of successful extensions: 1803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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