Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G15
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 432 DTPSNAPVTETEVSWMAS-IMFIFAPIAVFI 521
           D P  A V   +V WMA  +MF+FA +  F+
Sbjct: 252 DIPPVAYVKALDV-WMAGCMMFVFAALGEFV 281


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 116 VRNTKPHFPPRLA*WRVASAQMSKS*GIPY 27
           V NT+P   P+L  + + ++Q+ K   IP+
Sbjct: 143 VNNTQPMCSPKLLTFDLTTSQLLKQVEIPH 172


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 116 VRNTKPHFPPRLA*WRVASAQMSKS*GIPY 27
           V NT+P   P+L  + + ++Q+ K   IP+
Sbjct: 143 VNNTQPMCSPKLLTFDLTTSQLLKQVEIPH 172


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 116 VRNTKPHFPPRLA*WRVASAQMSKS*GIPY 27
           V NT+P   P+L  + + ++Q+ K   IP+
Sbjct: 143 VNNTQPMCSPKLLTFDLTTSQLLKQVEIPH 172


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 116 VRNTKPHFPPRLA*WRVASAQMSKS*GIPYSXIXXG 9
           V NT+P   P+L  + + ++Q+ K   IP+     G
Sbjct: 148 VNNTQPMCSPKLFAFDLNTSQLLKQVEIPHDVATTG 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,672
Number of Sequences: 438
Number of extensions: 5619
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)