Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G14
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.6  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   8.8  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 205  TQGSSVQWAFSGHPYSVVLASRAITATIRNTIKYCLA 95
            T  SS +WA  GH  +V  A  ++  +I+  ++ C+A
Sbjct: 1174 TGSSSSEWAVRGHKENVEKAIASLEKSIKQVMENCIA 1210


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 167 SIFGSAGLESHHGDNQEHDKVLFG------GHLRDIFQDYSFPNNYTNLKDSL 27
           S F   G    H  +  H  +++G      GHL++ F DY   +   NL++SL
Sbjct: 78  SSFVELGQALSHSSSNSHTYIMYGKSMVEIGHLQEEFMDYLNNSFLANLENSL 130


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 140 SHHGDNQEHDKVLFGGHLRDIFQDYSFPNNYTNLKD 33
           SH  D+++ DK     H R +F   S PN+  NL+D
Sbjct: 96  SHDLDSKDVDKQ----HQRKMFPGLSIPNSTNNLRD 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,747
Number of Sequences: 5004
Number of extensions: 37163
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)