Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G12
(936 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 38 0.002
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 35 0.019
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 31 0.31
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 29 1.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 2.2
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 5.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 5.0
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 6.6
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 26 6.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.8
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 26 8.8
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 8.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 385 QCHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTRDQKTATEPPSCVLCRTQGH 224
+C+NC GH +R C C C H + CT Q+ T C C T GH
Sbjct: 18 RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTAGH 68
Score = 32.7 bits (71), Expect = 0.076
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTRDQKTATEPPSCVLCRTQGHPA 218
C+ C YGH +R+C +C C H + C + A++ C C GH A
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC----QQASDGQLCYKCNQPGHIA 169
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 34.7 bits (76), Expect = 0.019
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKC--LDDHATTLCTRDQKTATEPPSCVLCRTQGHPA 218
CHNC+ GH S++C C C +DDH + C +K C+ C GH A
Sbjct: 89 CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKK-------CMNCGLLGHIA 137
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 382 CHNCQLYGHS-SRNCHARPRCVKCLDDHATTLCT 284
CH C LY + +CH CV+ LD H L T
Sbjct: 184 CHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNT 217
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1
Query: 417 WKPLIKKALRASATIVSCTGILPVIVTRALDASSVWTITP 298
WK L K++ RA TI C +L R+L+ SV TITP
Sbjct: 196 WKTLSKESARA--TIDECMRVLFYRDARSLNKFSVATITP 233
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 432 FPESPWKPLIKKALRASATIVSCTGILPVIVTRALDASSVWTITPRLFAL 283
F E W+ + KAL + +I+S T + + + + + VW +T + AL
Sbjct: 1440 FDEEFWETVSNKALLSIFSILSITNSQRLYLAKNTEETEVWMLTTMVEAL 1489
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 412 TPHKKGTPSQCHNCQLYGHSSRNCHARPR 326
T ++KG C NC H ++C RPR
Sbjct: 106 TKYRKGA---CENCGAMSHKVKDCMERPR 131
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 5.0
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = -3
Query: 853 NSGPSSVDSSREGCXDRISLALKXKNINFVSARNXANGIQIKVATPDDHRXLSSYLRKER 674
NSG S S E RISL LK +I+ + + +K SSY+ +E+
Sbjct: 4 NSGASESISIEETNRIRISLGLKPLDISEEKPQKELSDASVK----------SSYVDQEQ 53
Query: 673 ISYHTYTLQEEREL 632
+Y + QE+ E+
Sbjct: 54 QAYENWKKQEQEEI 67
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 332 PSMRQVFGRSRHDSLHSRSKNRDGTT*LRPVPNTGSPRE 216
PS F + DSL SR KN + ++ RP N G+ +
Sbjct: 277 PSSPTPFNSNSGDSLLSRIKNSNQSSSERPTANNGAQEQ 315
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 525 DAGGSHTIWFSSPSSLPPRVR 463
+AG SH + SSPS L PR R
Sbjct: 153 NAGLSHNVIVSSPSVLAPRTR 173
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 118 SPPAPASWNYPRTA*ALLTKTSRTNCTTASTXNSRGD 228
+PP PAS + T+ + L TS T+CTT+++ G+
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTS-TSCTTSTSIPPTGN 350
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 118 SPPAPASWNYPRTA*ALLTKTSRTNCTTASTXNSRGD 228
+PP PAS + T+ + L TS T+CTT+++ G+
Sbjct: 369 TPPPPASTSSTGTSSSPLLSTS-TSCTTSTSIPPTGN 404
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 478 TPEGKKIFNVRTVCRLSGITVETPHKKGTP 389
TP+ + I ++ T L+G+TV ++K TP
Sbjct: 175 TPQPQAIMHLETSSNLTGVTVNPFNRKLTP 204
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 379 HNCQLYGHSSRNCHARPRCVKCL 311
HN ++ G +S+ H RP + CL
Sbjct: 38 HNGEIVGGASKTKHGRPWSISCL 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,471
Number of Sequences: 5004
Number of extensions: 69788
Number of successful extensions: 230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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