Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G12
(936 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 33 0.43
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 33 0.43
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 32 0.57
02_05_0296 + 27639981-27640766 32 0.75
05_06_0270 - 26830231-26830394,26830489-26830681,26830853-268310... 31 1.3
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 30 3.0
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 30 3.0
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 4.0
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 29 4.0
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 29 5.3
11_06_0690 + 26303733-26306540 28 9.3
03_05_0206 + 21975077-21975673,21975733-21975831 28 9.3
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 32.7 bits (71), Expect = 0.43
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -3
Query: 922 GPAFDPVVPVLCHAVAAPGGTNENSGPSSVDSSREGCXDRISLALKXKNINFVSARNXAN 743
GP V PV A +APGG+ ++ S R ++ + K RN A
Sbjct: 126 GPGVRTVGPVPSTAQSAPGGSATGQTATAQSSPRAATTTKLDIEEKGPAFGDARWRNKAT 185
Query: 742 GIQIKVATPDD 710
G+ I ++ DD
Sbjct: 186 GVDIDDSSRDD 196
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = -3
Query: 382 CHNCQLYGHSSRNC------HARPRCVKCLDD-HATTLCTRD-QKTATEPPSCVLCRTQG 227
C C+ GHS +NC + + C C + H+ + C + + T+ SC +C+ QG
Sbjct: 97 CLLCRQRGHSLKNCPDKNDENLKKFCYNCGESGHSLSKCPKPIENGGTKFASCFVCKQQG 156
Query: 226 H 224
H
Sbjct: 157 H 157
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTR 281
C+NC+ GH +RNC P C C + H C +
Sbjct: 143 CNNCRKSGHLARNCPNEPVCNLCNVSGHLARECPK 177
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQGHPAN 215
C+NC+ GH +R+C P C HA L + C C+ GH AN
Sbjct: 41 CNNCKRPGHFARDC---PNVALC---HACGLPGHIAAECSSKDLCWNCKEPGHMAN 90
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Frame = -3
Query: 442 VCRLSGITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTRDQKTA 266
+C G+ + + C NC+ GH + +C C C H C+
Sbjct: 59 LCHACGLPGHIAAECSSKDLCWNCKEPGHMANSCPNEGICRNCGKSGHIARECSAPPMLP 118
Query: 265 TEPPSCVLCRTQGHPA 218
E C C GH A
Sbjct: 119 GEMRLCSNCYKPGHLA 134
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = -3
Query: 409 PHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTRDQKTATEPPSCVLCRT 233
P G C NC GH + C C C H C + P C LC
Sbjct: 115 PMLPGEMRLCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNE-------PVCNLCNV 167
Query: 232 QGHPA 218
GH A
Sbjct: 168 SGHLA 172
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPR-------CVKCL-DDHATTLCTRDQKTATEPPSCVLCRTQG 227
C NC GH +R C A P C C H CT ++ +C CR G
Sbjct: 98 CRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAECTNEK-------ACNNCRKSG 150
Query: 226 HPA-NXP 209
H A N P
Sbjct: 151 HLARNCP 157
>02_05_0296 + 27639981-27640766
Length = 261
Score = 31.9 bits (69), Expect = 0.75
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -2
Query: 272 NRDGTT*LRPVPNTGSPRELXVDAVVQFVLEVLVRRAHAVRG*FHDAGAGGEHAHCEHNE 93
N G T RPVP + SP ++ A + R H G + A A EH + +
Sbjct: 124 NFPGATASRPVPASASPADIRAAAAAAAAAAAHLERPHGPTGTAYPATAAAEHHQQQQQQ 183
Query: 92 KF 87
++
Sbjct: 184 QY 185
>05_06_0270 -
26830231-26830394,26830489-26830681,26830853-26831069,
26831864-26831990,26831998-26832121
Length = 274
Score = 31.1 bits (67), Expect = 1.3
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = -3
Query: 715 DDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHR 536
D R SS+L ++ S+ T+ +E+E V++ +E+D+ + A+ + G P ++
Sbjct: 73 DSGRLPSSHLHRQSESWATHGSDKEKEDEEVVQAKNEEVDSFIAAAE--KTGPPQQNIDC 130
Query: 535 MHTGRGREPYNMVLVALQ--STPEGKKIFNVRTVCRLSGITVETPHKKG 395
R R+ N VAL+ + E KI R + L ++T G
Sbjct: 131 TAAAR-RQANNYAKVALEHYNKDENNKI-QYRFIKALKSCAIQTNESYG 177
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKCLD-DHATTLCTRDQKTATEP 257
C C GH + NC RC CL+ H + C A +P
Sbjct: 230 CVRCLDKGHIASNCSGPVRCHSCLEAGHMSCFCATRPTKAHQP 272
Score = 28.7 bits (61), Expect = 7.0
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = -3
Query: 346 NCHARPRCVKCLD-DHATTLCT---RDQKTATEPPSCVLCRTQGHPANXPWMLLYSLSSR 179
N + P CV+CLD H + C+ R C T+ A+ P LSS
Sbjct: 223 NSNFLPSCVRCLDKGHIASNCSGPVRCHSCLEAGHMSCFCATRPTKAHQPVGKFPKLSSE 282
Query: 178 SWLEGLMLSADSSTTPALAASTHIANTTRSFI 83
+ L+ + SS A S HI ++ R+ +
Sbjct: 283 ---DNLVWRSKSSPAKKTAVSPHIPSSPRNTV 311
>01_07_0238 +
42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = -3
Query: 667 YHTYTLQEERELRAVIRGIPKELDAELVKADLL-EQGLPVNSVHRMHTGRGREPY---NM 500
++ Y+L E+ ++ GI +LD E+++ LL Q L V+ + ++ + N
Sbjct: 716 HNEYSLARLDEIMMLLHGIKADLDNEVLEGQLLCYQYLLVHMIKANEENTSKKAFLILNE 775
Query: 499 VLVALQSTPEGKKI 458
++VAL+S E +++
Sbjct: 776 LIVALKSKKESRRL 789
>05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = -3
Query: 388 SQCHNCQLYGHSSRNCHARP----RCVKCLD-DHATTLCTRDQKTATEPPSCVLCRTQGH 224
S+C+ C+ GH +R+C + C KC H + C +E C C+ GH
Sbjct: 924 SECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQSTGGSE---CFKCKQPGH 980
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 907 PVVPVLCHAVAAPGGTNENSGPSSVDSSREGC 812
P +LC A PGG + + P +DS R C
Sbjct: 120 PFTCMLCEGKATPGGNHSSPLPPPIDSRRISC 151
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -2
Query: 242 VPNTGSPRELXVDAVVQFVLEVLVRRAHAVRG*FHDAGAGGEHAHCEHNEKFHFVRSLFR 63
+P P + + +++ ++LV H++ H HA ++ + HFV +
Sbjct: 1821 LPRRLPPGDSRMPIWIRYTKKILVEEGHSIPNMIHIFQLIVRHADLFYSCRAHFVPQMVN 1880
Query: 62 SLSRL 48
SLSRL
Sbjct: 1881 SLSRL 1885
>11_06_0690 + 26303733-26306540
Length = 935
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -3
Query: 409 PHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTRDQKTATEP 257
P + +C C GH +C PRC +C + C D+ ++ P
Sbjct: 85 PIPRWLQGRCFCCLGLGHLKADCKGAPRCYRCWFSGYLERDCKFDRGPSSRP 136
>03_05_0206 + 21975077-21975673,21975733-21975831
Length = 231
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 504 IWFSSPSSLPPRVRKSLTSELSVGFP-ESPWKPL 406
+W S PSS+P R ++TS G P ++P+ L
Sbjct: 154 VWSSDPSSIPRATRLTITSADEEGLPVDTPFPEL 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,722,944
Number of Sequences: 37544
Number of extensions: 549607
Number of successful extensions: 1812
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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