Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G12
(936 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 89 1e-17
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 85 2e-16
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 85 2e-16
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 81 3e-15
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 78 2e-14
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 78 2e-14
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 77 3e-14
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 73 4e-13
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 73 4e-13
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 73 6e-13
AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein ... 70 4e-12
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 69 7e-12
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 69 7e-12
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 60 3e-09
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 56 7e-08
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 56 7e-08
AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein ... 50 3e-06
AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein. 46 6e-05
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 34 0.24
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 34 0.24
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 34 0.24
M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1 ... 34 0.32
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 32 1.3
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical... 31 3.0
AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p pro... 30 4.0
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 30 4.0
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 88.6 bits (210), Expect = 1e-17
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
Frame = -3
Query: 766 VSARNXANGI-QIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAE 590
+ AR +G+ ++ A + R + ++L E +H Y L+E+R R ++G+
Sbjct: 154 IEARASMSGVLRLYAADANTFRTIVNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHH 213
Query: 589 LVKADLLEQGLPVNSVH----RMHTGRGR-EPYNMVLVALQSTPEGKKIFNVRTVCRLSG 425
+K +L + G V +H R G + P NM + + + K+I V+ +C +
Sbjct: 214 QIKDELEKIGHKVLDIHTPLRRNEPGTSKASPVNMFFLNIAAAANNKEILAVKALCHMR- 272
Query: 424 ITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCV 245
+ +E K+ QCH CQ GH+++ C CVKC +H CTR + E +C
Sbjct: 273 VVIEPLRKRNAIVQCHRCQQIGHTAKYCRKAHICVKCAGEHPAKDCTRPR---IELCTCY 329
Query: 244 LCRTQGHPAN 215
C Q HPAN
Sbjct: 330 NCGGQ-HPAN 338
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 84.6 bits (200), Expect = 2e-16
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Frame = -3
Query: 739 IQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELD-AELVKADLLEQ 563
I++++ T DHR ++ YL +Y+TY L+ + L+ V++GI + AE+++A +
Sbjct: 261 IKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKAKN 320
Query: 562 GLPVNSVHRMHTGRGREPYNMV-----LVALQSTPEGKKIFNVRTVCRLSGITVETPHKK 398
+++ ++ + +P + L AL+ E I+N++ + ITVE PHK+
Sbjct: 321 FSAKTAINILNKDKVPQPLFKIELEPELQALKKN-EVHPIYNLQYLLHRR-ITVEEPHKR 378
Query: 397 GTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQGHPA 218
P QC NCQ YGH+ C + CV C + H T C ++ K C C + H A
Sbjct: 379 INPVQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKN-KDDKSVKKCSNC-GEKHTA 436
Query: 217 NXPWMLLY-SLSSR 179
N ++Y L SR
Sbjct: 437 NYRGCVVYKELKSR 450
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 84.6 bits (200), Expect = 2e-16
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Frame = -3
Query: 739 IQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELD-AELVKADLLEQ 563
I++++ T DHR ++ YL +Y+TY L+ + L+ V++GI + AE+++A +
Sbjct: 105 IKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKAKN 164
Query: 562 GLPVNSVHRMHTGRGREPYNMV-----LVALQSTPEGKKIFNVRTVCRLSGITVETPHKK 398
+++ ++ + +P + L AL+ E I+N++ + ITVE PHK+
Sbjct: 165 FSAKTAINILNKDKVPQPLFKIELEPELQALKKN-EVHPIYNLQYLLHRR-ITVEEPHKR 222
Query: 397 GTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQGHPA 218
P QC NCQ YGH+ C + CV C + H T C ++ K C C + H A
Sbjct: 223 INPVQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKN-KDDKSVKKCSNC-GEKHTA 280
Query: 217 NXPWMLLY-SLSSR 179
N ++Y L SR
Sbjct: 281 NYRGCVVYKELKSR 294
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 80.6 bits (190), Expect = 3e-15
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Frame = -3
Query: 772 NFVSARNXANGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDA 593
+F + N I+I+ T D H + + L + I H++ + + + VIR + +
Sbjct: 664 SFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPT 723
Query: 592 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVE 413
+ +++ L + G+ + M R P + V + +G + V + L G TV+
Sbjct: 724 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL-KVLLLKSLGGQTVK 782
Query: 412 TPHKKGT--PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
K+ + P+QCH CQ +GH+ C +C+KC HAT CT+ + P +C C
Sbjct: 783 VERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNL---PATCANC 839
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 77.8 bits (183), Expect = 2e-14
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Frame = -3
Query: 772 NFVSARNXANGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDA 593
+F + N I+I+ T D ++ + + L I H++ + + + VIR + +
Sbjct: 587 SFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIRHLHQSTPT 646
Query: 592 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVE 413
+ +++ L + G+ + M R P + V + +G + V + L G TV+
Sbjct: 647 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL-KVLLLKSLGGQTVK 705
Query: 412 TPHKKGT--PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
K+ + P+QCH CQ +GH+ C +C+KC HAT CT+ + P +C C
Sbjct: 706 VERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNL---PATCANC 762
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 77.8 bits (183), Expect = 2e-14
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Frame = -3
Query: 772 NFVSARNXANGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDA 593
+F + N I+I+ T D ++ + + L I H++ + + + VIR + +
Sbjct: 587 SFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIRHLHQSTPT 646
Query: 592 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVE 413
+ +++ L + G+ + M R P + V + +G + V + L G TV+
Sbjct: 647 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL-KVLLLKSLGGQTVK 705
Query: 412 TPHKKGT--PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
K+ + P+QCH CQ +GH+ C +C+KC HAT CT+ + P +C C
Sbjct: 706 VERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNL---PATCANC 762
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 77.4 bits (182), Expect = 3e-14
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Frame = -3
Query: 772 NFVSARNXANGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDA 593
+F + N I+I+ T D + + + L + I H++ + + + VIR + +
Sbjct: 664 SFTTKSELGNNIRIQAKTMDAYNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPT 723
Query: 592 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVE 413
+ +++ L + G+ + M R P + V + +G + V + L G TV+
Sbjct: 724 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL-KVLLIKSLGGQTVK 782
Query: 412 TPHKKGT--PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
K+ + P+QCH CQ +GH+ C +C+KC HA+ CT+ + P +C C
Sbjct: 783 VERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHASVSCTKPKNL---PATCANC 839
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 73.3 bits (172), Expect = 4e-13
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 2/174 (1%)
Frame = -3
Query: 745 NGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLE 566
NG++I+ + + L + T + ER R +IR + + +LL+
Sbjct: 526 NGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLK 585
Query: 565 QGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGK--KIFNVRTVCRLSGITVETPHKKGT 392
G V M P M V + +G KI +++ + + +E ++
Sbjct: 586 LGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVDIERKNRTRD 644
Query: 391 PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQ 230
P QC+ CQ + H+ +C PRC+KC +H ++ CT K T P +CV C Q
Sbjct: 645 PVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCT---KPRTTPATCVNCSGQ 695
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 73.3 bits (172), Expect = 4e-13
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 2/174 (1%)
Frame = -3
Query: 745 NGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLE 566
NG++I+ + + L + T + ER R +IR + + +LL+
Sbjct: 504 NGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLK 563
Query: 565 QGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGK--KIFNVRTVCRLSGITVETPHKKGT 392
G V M P M V + +G KI +++ + + +E ++
Sbjct: 564 LGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVDIERKNRTRE 622
Query: 391 PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQ 230
P QC+ CQ + H+ +C PRC+KC +H ++ CT K T P +CV C Q
Sbjct: 623 PVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCT---KPRTTPATCVNCSGQ 673
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 72.9 bits (171), Expect = 6e-13
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 2/171 (1%)
Frame = -3
Query: 745 NGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLE 566
NG++I+ + L T + ER R VIR + + +LL+
Sbjct: 534 NGVRIQAKDMTAFNKIKEVLVANGFPLFTNQPKSERGFRVVIRHLHHSTPCSWIVEELLK 593
Query: 565 QGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGK--KIFNVRTVCRLSGITVETPHKKGT 392
G V M P M V + +G KI +++ + + +E ++
Sbjct: 594 LGFQARFVRNMTNPATGGPMRMFEVEIAMAKDGSHDKIISLKQIGG-QRVDIERKNRTRE 652
Query: 391 PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
P QC+ CQ + H+ +C PRC+KC DH ++ CT+ + T P +CV C
Sbjct: 653 PVQCYRCQGFRHAKNSCMKPPRCMKCAGDHLSSCCTKPRST---PATCVNC 700
>AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein
protein.
Length = 965
Score = 70.1 bits (164), Expect = 4e-12
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Frame = -3
Query: 745 NGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLE 566
NG++I+ + + L T + ER R +IR + + +LL+
Sbjct: 541 NGVRIQAKDMTAYNKIKEVLTANGFPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLK 600
Query: 565 QGLPVNSVHRMH---TGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSGITVETPHKKG 395
G M TG + + +V + + GK I ++ +L G V+ K
Sbjct: 601 LGFQARFARNMTNPATGGPMRMFEVEIVMAKDSSHGKII----SLKQLGGQRVDIERKNR 656
Query: 394 T--PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
T P QC+ CQ + HS +C PRC+KC H ++ CT K T P +CV C
Sbjct: 657 TREPVQCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCT---KPRTTPATCVNC 707
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 69.3 bits (162), Expect = 7e-12
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 2/174 (1%)
Frame = -3
Query: 745 NGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLE 566
NG++I+ + + L + T + ER R +IR + + +LL+
Sbjct: 119 NGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLK 178
Query: 565 QGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGK--KIFNVRTVCRLSGITVETPHKKGT 392
G V M P M V + +G KI +++ + + +E ++
Sbjct: 179 LGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVDIERKNRTRE 237
Query: 391 PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQ 230
P QC+ CQ + H+ +C PRC+K +H ++ CT K T P +CV C Q
Sbjct: 238 PVQCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCT---KPRTTPATCVNCSGQ 288
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 69.3 bits (162), Expect = 7e-12
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 2/174 (1%)
Frame = -3
Query: 745 NGIQIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLE 566
NG++I+ + + L + T + ER R +IR + + +LL+
Sbjct: 119 NGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLK 178
Query: 565 QGLPVNSVHRMHTGRGREPYNMVLVALQSTPEGK--KIFNVRTVCRLSGITVETPHKKGT 392
G V M P M V + +G KI +++ + + +E ++
Sbjct: 179 LGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVDIERKNRTRE 237
Query: 391 PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLCRTQ 230
P QC+ CQ + H+ +C PRC+K +H ++ CT K T P +CV C Q
Sbjct: 238 PVQCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCT---KPRTTPATCVNCSGQ 288
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 60.5 bits (140), Expect = 3e-09
Identities = 31/70 (44%), Positives = 37/70 (52%)
Frame = -3
Query: 424 ITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCV 245
ITVE PHK+ P QC NCQ YGH+ C P CV C D H + C +++ A E C
Sbjct: 26 ITVEEPHKRNAPVQCTNCQEYGHTRSYCTLAPVCVVCGDLHDSKQCQINKENACE-KKCN 84
Query: 244 LCRTQGHPAN 215
C H AN
Sbjct: 85 NC-GGNHTAN 93
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 56.0 bits (129), Expect = 7e-08
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 18/171 (10%)
Frame = -3
Query: 736 QIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLEQG- 560
+I A PD R L K + + L+EE+ R V++GI + + ++ + G
Sbjct: 238 RIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGY 297
Query: 559 ---------------LPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSG 425
+ VN T + N+ + L+ P K+ + + R
Sbjct: 298 EVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLKQGPNVKESLKITRLGRYR- 356
Query: 424 ITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHAT--TLCTRD 278
+TVE ++ QC CQ++GHS C P C KC H T LC D
Sbjct: 357 VTVERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISD 407
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 56.0 bits (129), Expect = 7e-08
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 18/171 (10%)
Frame = -3
Query: 736 QIKVATPDDHRXLSSYLRKERISYHTYTLQEERELRAVIRGIPKELDAELVKADLLEQG- 560
+I A PD R L K + + L+EE+ R V++GI + + ++ + G
Sbjct: 272 RIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGY 331
Query: 559 ---------------LPVNSVHRMHTGRGREPYNMVLVALQSTPEGKKIFNVRTVCRLSG 425
+ VN T + N+ + L+ P K+ + + R
Sbjct: 332 EVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLKQGPNVKESLKITRLGRYR- 390
Query: 424 ITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHAT--TLCTRD 278
+TVE ++ QC CQ++GHS C P C KC H T LC D
Sbjct: 391 VTVERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISD 441
>AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein
protein.
Length = 257
Score = 50.4 bits (115), Expect = 3e-06
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = -3
Query: 391 PSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTATEPPSCVLC 239
P+QCH CQ +GH+ C +C+KC HAT CT+ + P +C C
Sbjct: 2 PTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNL---PATCANC 49
>AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein.
Length = 433
Score = 46.4 bits (105), Expect = 6e-05
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = -3
Query: 457 FNVRTVCRLSGITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LDDHATTLCTR 281
F + + +S TV+ P +C +CQL GH+S++C P CV C L H CTR
Sbjct: 179 FTLPSKLTVSWHTVKVSEYIPNPMRCKSCQLLGHTSKHCKNPPACVSCNLAPHLPVPCTR 238
Query: 280 DQKTATEPPSCVLCRTQGHPANXP 209
C C Q HPA+ P
Sbjct: 239 --------IFCANCTGQ-HPASSP 253
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.24
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -3
Query: 385 QCHNCQLYGHSSRNC-HARPRCVKCLD-DHATTLCTRDQKTATEPPSCVLCRTQGH 224
+C+ C +GH +R C RC +C H + CT+ + P+C C GH
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ-----ADNPTCYRCNKTGH 106
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.24
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -3
Query: 385 QCHNCQLYGHSSRNC-HARPRCVKCLD-DHATTLCTRDQKTATEPPSCVLCRTQGH 224
+C+ C +GH +R C RC +C H + CT+ + P+C C GH
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ-----ADNPTCYRCNKTGH 106
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.24
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -3
Query: 385 QCHNCQLYGHSSRNC-HARPRCVKCLD-DHATTLCTRDQKTATEPPSCVLCRTQGH 224
+C+ C +GH +R C RC +C H + CT+ + P+C C GH
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ-----ADNPTCYRCNKTGH 106
>M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1
protein.
Length = 426
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 442 VCRLSGITVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLDDHATTLCTRDQKTAT 263
+ R+ TV P +C C +GH + C + C+ C + T T D + T
Sbjct: 168 IVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVETCINC----SETKHTNDGEKCT 223
Query: 262 EPPSCVLCR 236
+C+ CR
Sbjct: 224 NEKNCLNCR 232
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 31.9 bits (69), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKCLDD 305
C C +GH ++ C A PRC+ C D
Sbjct: 431 CLRCGEHGHKAKGCVAPPRCLICSSD 456
>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
protein protein.
Length = 1830
Score = 30.7 bits (66), Expect = 3.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = -3
Query: 382 CHNCQLYGHSSRNCHARPRCVKCLDDHATTL-----CTRDQKTATEPPSCVLCRTQGHPA 218
C NC GH R+C + C C H T L + + ++T PP+ L R A
Sbjct: 464 CLNCFARGHQLRDCTSMHSCFTCKGRHHTLLHRSPPNSENASSSTSPPTQQLPRPSSRNA 523
Query: 217 N 215
+
Sbjct: 524 S 524
>AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p
protein.
Length = 186
Score = 30.3 bits (65), Expect = 4.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 334 RPRCVKCLDD-HATTLCTRDQKTATEPPSCVLCRTQGHPANXP 209
R RC +CL++ H C + T C C T GH A P
Sbjct: 97 RQRCFRCLEEGHIAAHC---RSTVDRSQCCFRCGTAGHKAECP 136
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 30.3 bits (65), Expect = 4.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 484 QSTPEGKKIFNVRTVCRLSGITVETPHKKGTPSQCHNCQ--LYG-HSSRNCHARPRC 323
QST + + + R C+L G + H SQ H+ + L+G HS NC + P C
Sbjct: 1154 QSTHQHLLMRSARPTCQLCGDELTVDHILNACSQLHSIRSHLFGTHSLSNCLSIPSC 1210
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,511,206
Number of Sequences: 53049
Number of extensions: 896468
Number of successful extensions: 2909
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2898
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4628299878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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