Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_G10
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 46 4e-05
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 42 9e-04
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 39 0.006
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 34 0.14
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 30 2.9
02_01_0588 + 4350971-4351514,4351639-4351703 29 6.7
08_02_1085 + 24237804-24238403 28 8.9
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 28 8.9
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Frame = +1
Query: 475 GLTVSGALSLALEELNNGVDLLPDVEIHMQWNNTKYDMVTSTRLITEMSRAGVVAFFGPE 654
G V A+ LA+ ++N +LP ++ + +T T E+ VVA GP+
Sbjct: 51 GRAVMPAIELAVADVNADPGVLPGTKLSVITQDTNCSGFLGTMEALELLAKDVVAVLGPQ 110
Query: 655 GRCETEAI--IAQSRNLPMISYKCSDYQVSRL--PNFARLEPPGVXATKALISLLRYYRW 822
I ++P++S+ SD +S L P F R A+ S++ YRW
Sbjct: 111 SSSIAHVISHAVNEFHVPLVSFAASDPTLSSLEYPYFVRATTSDYFQMSAIASIINQYRW 170
Query: 823 NK--SLYCMKNLDDGXLT 870
+ ++Y + G +T
Sbjct: 171 REVIAIYVDDDYGRGGIT 188
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 41.5 bits (93), Expect = 9e-04
Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +1
Query: 475 GLTVSGALSLALEELNNGVDLLPDVEIHMQWNNTKYDMVTSTRLITEMSRAGVVAFFGPE 654
G + A+ A+ ++NN ++LP ++ + +++ + + VA GP
Sbjct: 43 GRVAAVAVLAAVNDINNDSNILPGTKLDLHMHDSSCNRFLGIVQALQFMEKDTVAIIGPL 102
Query: 655 GRCETEAI--IAQSRNLPMISYKCSDYQVSRL--PNFARLEPPGVXATKALISLLRYYRW 822
+ +A ++P++S+ +D +S L P F R A+ L+ YY W
Sbjct: 103 SSTTAHVLSHLANELHVPLMSFSATDPTLSSLEYPFFVRTTVSDQFQMTAVADLVEYYGW 162
Query: 823 NKSLYCMKNLDDGXLTLANYAKDLT 897
+ + D G +++ +L+
Sbjct: 163 KQVTTIFVDNDYGRNAISSLGDELS 187
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Frame = +1
Query: 493 ALSLALEELNNGVDLLPDVEIHMQWNNTKYDMVTSTRL-ITEMSRAGVVAFFGPEGRCET 669
A+ ALE++N+ +L + + +T D + + V+A GP+ C T
Sbjct: 50 AIQAALEDINSDSTILNGTTLKVDMRDTNCDDGFLGMVEALQFMETDVIAIIGPQ--CST 107
Query: 670 EA----IIAQSRNLPMISYKCSDYQVSRL--PNFARLEPPGVXATKALISLLRYYRW 822
A +A +P++S+ SD +S + P F R P + A+ +++ YYRW
Sbjct: 108 IAHIVSYVANELRVPLMSF-ASDATLSSIQFPFFVRTAPSDLYQMDAVAAIVDYYRW 163
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 34.3 bits (75), Expect = 0.14
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Frame = +1
Query: 493 ALSLALEELNNGVDLLPDVEIHMQWNNTKYDMVTSTRLITEMSRAGVVAFFGPEGRCETE 672
A+ LA+ ++N +L + + +T T ++ VVA GP+
Sbjct: 51 AIELAVGDVNADRTVLAGTTLSLISQDTNCSGFLGTIEALQLMEKNVVAVIGPQSSGIGH 110
Query: 673 AI--IAQSRNLPMISYKCSD--YQVSRLPNFARLEPPGVXATKALISLLRYYRWNK 828
I + ++P++S+ +D S P F R A+ S++ YY+W +
Sbjct: 111 VISHVVNELHVPLLSFAATDPTLSASEYPYFLRSTMSDYFQMHAVASIVDYYQWKE 166
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 404 SEGPASKPSAANTNTRAPCHMPSPSP 327
S GPAS PS + T++ AP + +P P
Sbjct: 28 SSGPASAPSTSTTSSSAPLPVAAPPP 53
>02_01_0588 + 4350971-4351514,4351639-4351703
Length = 202
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 554 ISTSGSRSTPLFSSSSANDSAPETVSPCLSRKSPVR 447
I S S S+ SSSS++ S P T PC + VR
Sbjct: 61 ILASSSSSSSSSSSSSSSSSMPRTTFPCKMMQGKVR 96
>08_02_1085 + 24237804-24238403
Length = 199
Score = 28.3 bits (60), Expect = 8.9
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = -3
Query: 608 MSLVEVTMSYFVLFHCM*ISTSGSRSTPLF---SSSSANDSAPETVSPCLS---RKSPVR 447
M+ ++ + +L C ++ + P SSSS+N S+ SP + KSP +
Sbjct: 1 MARADLALVAVLLAACAAVALAAEAQAPAAAPKSSSSSNSSSGSHTSPSKAPSPSKSPEK 60
Query: 446 AGK*PMVILNFLWASEGPASKPSAANTNTRAPCHMPSP 333
+GK P A++ P+ K A + A SP
Sbjct: 61 SGKAPAAAPPKAAAAKAPSGKSEAPSEAPDAESGAESP 98
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 590 TMSYFVLFHCM*ISTSGSRSTPLFSSSSANDSAPETVS 477
T+S F ++ TSGSRS P S SA D A +T++
Sbjct: 13 TLSLFAVYIPPQTITSGSRSAPCASERSAVDPAVKTLA 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,907,745
Number of Sequences: 37544
Number of extensions: 492071
Number of successful extensions: 1407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -