Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G10
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 736 SRLPNFARLEPPGVXATKALISLLRYYRWN 825
           +R   FAR  PP    + AL+ +++   W+
Sbjct: 110 TRFDYFARTVPPDTFQSIALVDVVKSANWS 139


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  SHCFILKNYFYYV 112
           SHC + +N+FY +
Sbjct: 192 SHCVVCQNFFYQI 204


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 736 SRLPNFARLEPPGVXATKALISLLRYYRWN 825
           +R   FAR  PP    + AL+ +++   W+
Sbjct: 200 TRFDYFARTVPPDTFQSIALVDVVKSANWS 229


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 284 VSTCSSSMVKTLIGQDCQH 228
           +S CSS   K L+   C+H
Sbjct: 54  LSACSSYFQKLLLSNPCKH 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,276
Number of Sequences: 438
Number of extensions: 4953
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)