Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_G03
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.73 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.73 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.8  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   9.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 833 GSHDLRPRYVRNFLRISRMPIISPAHSSYPLSCK 732
           GS+      V N LR+  +P ISPA ++  LS K
Sbjct: 76  GSYSSVSLQVANLLRLFHIPQISPASTAKALSDK 109


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 833 GSHDLRPRYVRNFLRISRMPIISPAHSSYPLSCK 732
           GS+      V N LR+  +P ISPA ++  LS K
Sbjct: 166 GSYSSVSLQVANLLRLFHIPQISPASTAKALSDK 199


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 41  KIFFXVAHATVKGTMSTRAYVARSRTMT 124
           +I F   H T K T   RA+   S  MT
Sbjct: 168 EILFDTVHVTFKLTFDNRAFTQASLAMT 195


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 735 QALLLRNCTCCYLMSIVCESLYHH 664
           +A+L++N   C L SI C   + H
Sbjct: 149 EAILIKNERICILKSITCALQFCH 172


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 LLINGTHQQKDKEEEQFVCPEGTQGNG 233
           LLI    + +D+EEE+ V   G  G G
Sbjct: 349 LLIERPKKDEDEEEEEEVVVVGRNGAG 375


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 552 NLNNFDKYKKVFKGKIN 602
           N NN++ YKK++   IN
Sbjct: 342 NNNNYNNYKKLYYNIIN 358


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 178 RKIRRKSSLFVPKEHRVMGISPTQPPADVFI 270
           + +  +S+  VP+   ++ + P  PP   FI
Sbjct: 38  QSLEARSADLVPEPRYIIDVPPRCPPGSKFI 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,378
Number of Sequences: 438
Number of extensions: 6127
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)