Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F20
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    28   2.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   3.6  

>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 90  PLVSQRPPLNLHKLTMNFAKILSFVFALVLALRMTSAAPEPRWKIFKKIEKMGRNIRDGI 269
           PL+   PP N+   + +     +  FAL +  R+ ++ P+P+        ++ R I D +
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTA-AFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 204

Query: 270 VKAGPAIEV 296
            + G   EV
Sbjct: 205 TEMGKYTEV 213


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 24/72 (33%), Positives = 36/72 (50%)
 Frame = +3

Query: 27  YGNPLXXLTFLIVAHQVISTAPLVSQRPPLNLHKLTMNFAKILSFVFALVLALRMTSAAP 206
           + NP   +TF    +  IS A +V     L    +T+N   + S+  A VLAL M++   
Sbjct: 294 FWNPAGWMTFFY--YFAISLAYMVLHTLVLLYQIITLNVT-VNSYSNA-VLALLMSNQLV 349

Query: 207 EPRWKIFKKIEK 242
           E +  +FKK EK
Sbjct: 350 EIKGAVFKKFEK 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,592
Number of Sequences: 5004
Number of extensions: 33758
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)