Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F17
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       29   6.6  
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856...    24   8.0  
02_05_0686 - 30900748-30902167,30903442-30904742                       24   9.2  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 565 GGGGGGXXXXKKXPPPXGXGG 627
           GGGGGG       PPP   GG
Sbjct: 81  GGGGGGTVMYTSPPPPYSGGG 101


>03_03_0038 +
           13984525-13984917,13985351-13985429,13985535-13985628,
           13985712-13985844
          Length = 232

 Score = 24.2 bits (50), Expect(2) = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 581 PPPPPPXXXKKKK 543
           PPPPPP   K K+
Sbjct: 82  PPPPPPKQEKAKR 94



 Score = 22.6 bits (46), Expect(2) = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 587 KXPPPPPP 564
           K PPPPPP
Sbjct: 37  KPPPPPPP 44


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 23.8 bits (49), Expect(2) = 9.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 581 PPPPPPXXXKK 549
           PPPPPP   KK
Sbjct: 364 PPPPPPPGGKK 374



 Score = 22.6 bits (46), Expect(2) = 9.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 587 KXPPPPPP 564
           K PPPPPP
Sbjct: 351 KGPPPPPP 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,888
Number of Sequences: 37544
Number of extensions: 266811
Number of successful extensions: 3414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3165
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)